Aful020443.1
Basic Information
- Insect
- Agonum fuliginosum
- Gene Symbol
- -
- Assembly
- GCA_947534325.1
- Location
- OX384046.1:14866800-14871110[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.23 32 6.7 0.9 2 21 198 217 197 218 0.91 2 11 0.011 1.6 10.8 6.2 1 23 231 253 231 253 0.99 3 11 0.096 14 7.9 0.6 1 23 275 297 275 297 0.96 4 11 0.011 1.6 10.8 3.9 1 23 300 322 300 322 0.97 5 11 0.00011 0.015 17.1 0.5 1 23 349 371 349 371 0.98 6 11 0.0004 0.056 15.4 0.6 2 23 375 396 374 396 0.97 7 11 0.00025 0.036 16.0 1.9 2 23 462 483 461 483 0.96 8 11 0.07 9.9 8.3 0.5 2 20 1296 1314 1295 1316 0.91 9 11 0.017 2.3 10.3 2.5 1 23 1329 1351 1329 1351 0.97 10 11 0.76 1.1e+02 5.0 1.8 1 23 1356 1378 1356 1378 0.96 11 11 0.37 52 6.0 3.1 1 23 1383 1406 1383 1406 0.90
Sequence Information
- Coding Sequence
- ATGTGTTCAATTTGTTTAAAGTATAATAATGAACATCTTATTAATTTAAACAGTAAATCTACAGACGATATACCTTTAGTTGACAAACTAGAATTTTGTATTCCAGGAACTCATCAAGAAAACAGAAATTCATATTTAATTTGCGCAAGCTGCGTACAAAAACTTAATACAAGTTATGAATTTATTACTTTATGTAAAACGAGTGGGACGAAATACGATAAGTACATTTCACAGTTATCAAATGATGCTGTGCATAAAAACCAACATAATTTAAAGATTTCTCTATTGGATATAAGAAAAATAGGATTGTTAGACCATCTGGATTTAAAAATAAAACAAGAAACAATTGACGAATCTGAAAATGCAACAGCTGTCGTAGAATATAATACCCACTGGGATCACGATTATTGCGTAGCACAATATGAAAACATTTTAAACAATACTGAAATAGAAATTGAGAAGGCAGATTCTCTGGCAATAATTGCGATTGCAAATGAACAAAACAACGGCGAAAAAAATGAAAGTAATGAAGACGGCAAAATGCAAACTGAGATTAAACAAGAAGTTTTGGAATATGATCCGGCAAGAAGTCAATGTGCAGCTTGCAAAAAGTATTTTAGCAGCCGACACCAGTACATTGTCCACTTTAAAATAAGAATATATCAGTTATATCGAAAAGTATACAAAAAATATAAATGTTGTACATGTTTTAAATCGTTTATGAATCGTAAGAAACTATACGATCATATTTTAACTCACTCGGAGAATCCAGTACCAGCTGTGACGATAAAAAGCAATATTGAGATTACCCCAAAAGGAAAGTTTAAGTGCAACATTTGTGCACAACAATTTCGTCTTATAAAATTATACGAAAAACATGTACAGGCTCACAAAATATACTCTTGCAAAATTTGCTCAAAGAAATTTTACTTTCGGCAAAAGTTAAACGAACATTCAAAGCTTCATATTGCTACAAAATATATCTGCAAGTTGTCAAATGATAAATTTCAAAATAAAATAACTTTAAAACGAGAAATTTGCAAATTTAAATGTCAACTTTGTAATAAAAGCTTTGACACTCCCAGAGGTGTTAAGGCACATGCAAAAATGCATACTGTAATATATTGTACAATTTGTAATAAAGGATTCTATGGCCCAAAATCACTATCGAAACACAAATTGACCCATAGAAAGAAAAATAAATCAGAGAATAAATATACTGAATTAAATCTTGAGAATACTCAAAATAGTAATGCCCAAAAAGAATCTACCGAAAATCTAAAAAAGAAAGATCAACAAGTAAATATTACAACAAATCAAAATACCAACATGATCGATGTTTATAGTAATGGCAAAACAAAATTTACAGATAGAGTATATTTAAATTGTACAATTTGTAATAAACGATTCAAGGGCCGTCGACTATTAAGGATACATAAAATGACTCATAAAAAGAAAAACAAATCAGAGGAAAAATATACTGAATTAAATCTTGAGAATAATCAAAATTTAACAGAAGATTGTCAAATACCTCAAAGTACTAATATGAACGCAATTTTTGATAGTAATGCCCAAAAAGAATCTACCGAAAATCTAGAAAAGGAAGATCATCAAGTAAATATTACTGCAACAGAACAAAATACAAACACGAACGATGCTATTTATATTAATGATCCAAAAGAATCAATAGGAAATCTAAAAAAAGAAAGTTGTAGTAATCAACAAATAATTGACAGTAATATTACAGCATCAAAAGAAAATACAAACATGAACGATGCTATTTATATTAATGATCCAAAAGAATCAATAGGAAATCTAAAAAAAGACAGTTGTAGTAATCAACAAATAATTGACAGTAATATTACAGCAACAGAACAAAATACAAACATGAACGATGTTATTTATATTAATACAATAAAATTAAATACCAATATGAACAATGATCAAACAGAATCTACTGGAAATTGTACAAATCAACAAATGAATGTTAGTAATATTACTACAACAAAACAAAATACAAACATGAACGATGTTATTTATATTGATGACCAAGAAGAATCTACTGAAAATATAAAAAAGGAATATCAACAAGTAAATATTACTACAACAAAACAAAATTCCAACATGAAAGATGATATTTATATTGATGACCAAAACGAATCTACTAAAGATCCAAAAACAGAAAATCAACAAGTAAATGTCAGTAATATTACTACAACAAAACAAAATTCCAACATGAACGATATTTTGTATAGTAATCAAAAAGGATCTATTGGAAATCTAAAAAAAGACAATTATAGTACTAAACAAGTAAATGTCATTAATATTACGACTACAACAAAACAAAATACCAACATGAAAGATGCTATTTATATTGATGACCAAGACGAATCTACTAAAGATCTAAAAAAAGAAAATCAACAAGTAAATGTCAGTAATATTACTACAACAAAACAAAATTCCAACATGAACGATATTTTGTATAGCAATCAAAAAGGATCTACTGGAAATCTAAAAAAAGAAAATTATAAAAATCAACAAGTAAATGTCATTAATATTACGACTACAACAAAACAAAATACCAACATGAAAGATGCTATTTATATTGATGACCAAGACGAATCTTCTAAAGATCTAAAAAAAGAAAATCAAGAAGTAAATGTCCTTAATATTACTACAACAAAACAAAATTCCAACATGAACGATATTTTGTATGGCAATCAAAAAGGATCTATTGGAAATCAAAAAAAAGAAAATTATAGTACTAAACAAGTAAATGTCATTAATATTACGACTACAACAGAACCAAATACCAACATGAAAGAATCTACTAAAGATCTAAAAAAAGAAAATCAAGAAGTAAATATCAGTAATATTACTACAACAAAACAAAATTCCAATATGAACAATATTTTGTATAGTAATCAAAAAGGATGTACTGGAGATCTAAAAAAAGGAAATTACAGTACTCAACAAGTAAATGTCATTAATATTACTACAACAAAACAAAATACCAACATGAAAAATGCTATTTATATTGATGACCAAAACGAATCTACTAAAGATCTAAAAAAAGAAAATCAAGAAGTAAATGTCAGTAATATTACACCAAAACAAAATACCAACATGAACGATATTTTGTATACTAATCAAAAAGGATCTACTGGAAATCTAAAAAAAGGAAATTATAATAATCAAGAAGTAAATGTCACTAATATTACTACAAAAAAACAGAATATCAACATGAACGATATTTTGTATAGTAATCAAAAAGGATCTACTGGAAATCTAAAAAAAGAAAATTATAATAATCAACAGGTAAATGTCACTAATATTACTACAACAAAACAAAATACCAATATGAACGATATTTTGTATAGTAATCAAAATGGACCTACAGGAAATCTAAAAATAGAAAATTATAAAAATCAACAAGTAAATGTCACTAATATTACTACAACAAAACAAAATACCAACATGAACGATATTTTGTATAGTAATCAAAATGAATCTACTGAAAAATTAAAACAAGAAAATTGTAATAATCAGCAAATAAATGACAGTAATATTATTATAAAAGTAGATATTCAAGACAACATAAAAACATTTACTCTACAAATTAAAAATAATAACTCAGATATTAACGAAACTCCGAATATGCAAAAAGAAAATGTTTTAAAAGTACCAGACAATAAAATTGAGGCTACAAATTTACAGGATACTACACAAAAAACTGAAAATAATATAAACCAAAATTTTGATGAGATAAAAATAGAAACAACCTGTGAAACTAATAGCTCATTATTATTAGACAACAATGTACCGTCAATATCTCAAAACAATTCTACATCTGAAGTTAAATCAGATATTTCAGAACGAATTTTGCAATGCAAATTTTGTAAAGAAGTATTCAATAATAAAGTATCAACCATGGCCCATTATAGTTCTCTAAAAATGAATGAACTAAATAGAGTTACTAAAATATACACATGCTGCATTTGTAAAGCAATATTTAATCTAAAAAGAAACTGGCAAAATCATATGACACTTCATCTAAGCAAAATATTTTCTTGTAATAGGTGTCCAAAATCTTATTTATTTAAATTAGCTTATGATAAACATAGAAGAATCCATGAACAACAGAAATATCTATGTATGGTGTGTTACTACAAGTTTGACAACGAGGAACAATTAAAACATCATTTCTTTAGTAGTCATTGTAAGAAAGACCCTGAAGCTAAAAGTGCAAATGCATTGTAA
- Protein Sequence
- MCSICLKYNNEHLINLNSKSTDDIPLVDKLEFCIPGTHQENRNSYLICASCVQKLNTSYEFITLCKTSGTKYDKYISQLSNDAVHKNQHNLKISLLDIRKIGLLDHLDLKIKQETIDESENATAVVEYNTHWDHDYCVAQYENILNNTEIEIEKADSLAIIAIANEQNNGEKNESNEDGKMQTEIKQEVLEYDPARSQCAACKKYFSSRHQYIVHFKIRIYQLYRKVYKKYKCCTCFKSFMNRKKLYDHILTHSENPVPAVTIKSNIEITPKGKFKCNICAQQFRLIKLYEKHVQAHKIYSCKICSKKFYFRQKLNEHSKLHIATKYICKLSNDKFQNKITLKREICKFKCQLCNKSFDTPRGVKAHAKMHTVIYCTICNKGFYGPKSLSKHKLTHRKKNKSENKYTELNLENTQNSNAQKESTENLKKKDQQVNITTNQNTNMIDVYSNGKTKFTDRVYLNCTICNKRFKGRRLLRIHKMTHKKKNKSEEKYTELNLENNQNLTEDCQIPQSTNMNAIFDSNAQKESTENLEKEDHQVNITATEQNTNTNDAIYINDPKESIGNLKKESCSNQQIIDSNITASKENTNMNDAIYINDPKESIGNLKKDSCSNQQIIDSNITATEQNTNMNDVIYINTIKLNTNMNNDQTESTGNCTNQQMNVSNITTTKQNTNMNDVIYIDDQEESTENIKKEYQQVNITTTKQNSNMKDDIYIDDQNESTKDPKTENQQVNVSNITTTKQNSNMNDILYSNQKGSIGNLKKDNYSTKQVNVINITTTTKQNTNMKDAIYIDDQDESTKDLKKENQQVNVSNITTTKQNSNMNDILYSNQKGSTGNLKKENYKNQQVNVINITTTTKQNTNMKDAIYIDDQDESSKDLKKENQEVNVLNITTTKQNSNMNDILYGNQKGSIGNQKKENYSTKQVNVINITTTTEPNTNMKESTKDLKKENQEVNISNITTTKQNSNMNNILYSNQKGCTGDLKKGNYSTQQVNVINITTTKQNTNMKNAIYIDDQNESTKDLKKENQEVNVSNITPKQNTNMNDILYTNQKGSTGNLKKGNYNNQEVNVTNITTKKQNINMNDILYSNQKGSTGNLKKENYNNQQVNVTNITTTKQNTNMNDILYSNQNGPTGNLKIENYKNQQVNVTNITTTKQNTNMNDILYSNQNESTEKLKQENCNNQQINDSNIIIKVDIQDNIKTFTLQIKNNNSDINETPNMQKENVLKVPDNKIEATNLQDTTQKTENNINQNFDEIKIETTCETNSSLLLDNNVPSISQNNSTSEVKSDISERILQCKFCKEVFNNKVSTMAHYSSLKMNELNRVTKIYTCCICKAIFNLKRNWQNHMTLHLSKIFSCNRCPKSYLFKLAYDKHRRIHEQQKYLCMVCYYKFDNEEQLKHHFFSSHCKKDPEAKSANAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -