Aful023914.1
Basic Information
- Insect
- Agonum fuliginosum
- Gene Symbol
- -
- Assembly
- GCA_947534325.1
- Location
- OX384038.1:34115234-34118437[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.74 1e+02 5.1 3.0 1 23 604 627 604 627 0.90 2 13 5 7.1e+02 2.5 0.4 3 23 687 708 686 708 0.94 3 13 0.0032 0.45 12.5 1.2 2 23 718 739 717 739 0.96 4 13 4e-05 0.0056 18.5 1.1 2 23 742 763 741 763 0.97 5 13 0.00047 0.066 15.1 3.0 1 23 769 791 769 791 0.98 6 13 8.8e-05 0.012 17.4 5.0 2 23 798 819 797 820 0.94 7 13 0.00012 0.018 16.9 2.9 2 23 857 879 856 879 0.96 8 13 1.5 2.1e+02 4.1 0.1 2 23 895 915 894 915 0.95 9 13 3e-05 0.0042 18.9 0.8 1 20 921 940 921 943 0.93 10 13 0.0013 0.19 13.7 0.7 1 23 951 973 951 973 0.99 11 13 0.012 1.7 10.7 6.9 1 23 979 1001 979 1001 0.97 12 13 2.6e-06 0.00036 22.3 3.7 1 23 1007 1029 1007 1029 0.98 13 13 0.00017 0.024 16.5 6.0 1 23 1035 1057 1035 1058 0.96
Sequence Information
- Coding Sequence
- ATGGAGAATCTAAACAGTATAGCGTGCCCTGTTTGCACACTGTACCTTAGACCAGGAATGACATTAGAAAATCATTTGACAAGTCATCCAAAACAAAAGGTAATCGAGGCACTGATAAGAGTAACTCACCTTGGTCCCGACAATGTCGAAAAAGTAGCAAACGTACCTTTACATAATGAGTGTCATCAACAAATGGCACCCACAACAGGGATGGCACAAACACAAGGAATGGCACCATCGCCTGGGATGGGAATCCTTCCTCAAATGAATAACATGAATCAGATTCCAACCAATCATTCATTTATATACCAACAATTTATGAGTACTTCCGGTACTCAGCCCGTTATAAACATGAATCCTATGAACCAGCAGTTTGTCGCAATACCCGCCGTGTTCAATCCACAGATGGTGATGCCACAGTATGTATTTCAGCAGCAACAGCAAATGCAAATAGTATCGGCAGGTGGAAATATTCCAGGAAATGTTCAGCAATGTATTCCGCGTTCAGCAGTAGATTTTTCGACTTCAAATCCAGCAATATGTGCTCTCGCAAACACGCAAATACAAGATCCATTAAATTCGATCGTTAATTCTACAGTTTCAGCTTCCAGATCAAGTGTAATTTCTATGAATAGTTCTCCGGAAATTTCTTCCGTTTCTGATAAAATAAATAAATTTAGAAATTCTTTAGAATCGAATTCTTTAAATTTAGAAGGTATTGTTACACTTATGGATAAAACATCTAACGTTTCTATAGATAAATCATATAATATTCCAAGATCTTTGGAATCAAATAATGCGAATATAGTAAATGTAACAAATTTAGATAATTCTTTAGCAAGTATAGATCTGACAGAGGAAGATGAAAATAAGGACGATAAAGACATATCTTCTACTTCTGATCCAGATTCAAATATATCTTCAGAAGGACTGGATAATGAAATTCCTCTTGACATCGTTGAACATAATATAGAAGAGGATGAAAAAAAGGAAGAAGAAAATAAAGATGAAAATGAGCTGAATAAAGCTTGCCAAACTACACTTACTGATGAAAAAGACGATGAAAAAGATGAAAGCTTCAACTCCGAGTCAGCAGAAAATGACATCGAGCGAGAAATAATTATAGGAAGTGCACATCCAATTTTTCACCAAAACCAAACGGATAATATTACTTCTAACAATGATTATGAAAGACTTCAAACAAACATAGAATGTTCTTCACTTAGTGAATTACAAAATGATCCCAACATTACTGTTTTGGAGATGGATGAAGATGCAATGAATTTTATCCTCCCAAATGATTTTATGCAAAGCGGGCATTCGATCATTTCTAAAGAAAATGAAATTGAATGCGATACTGACGCAAATACTAGAACAGATATATTAATTAATGATGAAAAACAAAATGATAACCATGATAACATTATAGTAGGAGCACCGGATTACGAGGAAGATAATATAGATGAGAAATACGACGAAGAGTGTGTATCTCGAGAAAGCTTAAACATTAGAGCAGATGAAAGAATGCCACCGAGAGGAGAACTTTCCGAACAAGAAAGTAACGGAGCAAGTGAAGTTGGTTGGGGAAGTAGAATTTATCAAGAAGGCAGTTCCGGTATGTCAACTTCCTACGATCTTCTTGCGCGTGAAAGCTGGGAAGCATCTGATTGTTCAGATTCTGAAATGCCACCTTTACAAAGTAGAATTCAACCATCACTAGATTATAATGCAGAAGATGTTGACGAACCTGATCCCTTACCTGAAGAAGAACTGGAAAATAAGGACAATTTATCTACTTCGTCATTTCATTTTAGTTGTTCACTTTGTGACCAAACATTTAGGTGTCCCAAAGAACGACGAGTACATCAAACTCAAGATCATGCGTCCAGTAGTTCAGGATCAAATGAGAAAAAAATAGATATTCATGCAGATTTATCCAAAGTAGGAGAAGAAGATTCCAAATTAGACATACTTATGGACATAAATGAAGTGGAAACAGAATCAAAGTATATAGTAACTGAAGAAGAGACCAAAACAGAAACAAAAGAGCATTTATTGTGCAATACTTGTGGAGAATTATTACCGTCTATGAGACAATTTAATATCCACAATAAAAAAGTTCATAATATTCAAATTCCCAATCTAAATTTAACTTGTAAAACTTGTAACGAACCGTTTAAAAAACGAATGGAATTTATAGAACATTTAAAACAACATCCTCTAGAATGTAGCATATGTGGTAAACAATTTTATAAACCTACTAATTTTAAAATGCATGTTAAGAGGCATTCAGGAACTCGGCCACATAAGTGTGACATATGTAATAAAACATTTTTCGCTAAACAAAAACTTCGAGAACACCTAAATATTCATACCGGAATCTCACCAATAAAATGTACAATGTGCGATGAATCGTTTAAACGATATTCAAATTTAGTTCAACATCGTAATCATCATCATTTAAAAATTAAAAAGAAGACCAGAGAATATATGTGTCATTGTGGACAAATTAGCCACTCTAAAAGTAAATTTGATTGGCACAAAGAAACGCATGAACCAAAACCTAAATCTTGTACATATTGCAACGAAAAATTTATTCATATGGCTAGTTTAACTCGTCATATTCGACGGTCTCACAATCAGCATTATGTTCCGGACGATAACAGGAGGGATGAAAATGTAGAGTGCAAAATTTGTAAAGGAGTTTACTTAAAGTCTAGTATAGAGGCTCATATGACCATTCATTCTGGCAAAAGGCAACATGTATGCCCAATATGTAATAAGGAATTTACCACAAAGTGGAATTTAAAATTACATAAATGGATACATGCTGCACCATCAAATAAACCTTATAAATGTGATATTTGCCAGAGTGCATACTTTAGAGAGTCCGATTACGTTTCACATATGAATTCACATCGTAGTGTAAAACCATATACTTGTAATTATTGTGGCTGTAAATTTATTCGTAAATATAACTGTGTAAGGCATGTTAAAGAACATGAAGCGGGAAAATCATATAATTGCGATGTTTGTAACAAGAGTTTTCATCGGTCATATTACCTCAAGGAACATATGAGGGTTCATACAGGAGCGCGACCATTTTCGTGTAACATATGCGGGAAAACGTCAACAACTAAATCGAATCATAATAAACATATGAAAATACATCACGCCAGAGAACCCGTTACAACCGAAGGCTAA
- Protein Sequence
- MENLNSIACPVCTLYLRPGMTLENHLTSHPKQKVIEALIRVTHLGPDNVEKVANVPLHNECHQQMAPTTGMAQTQGMAPSPGMGILPQMNNMNQIPTNHSFIYQQFMSTSGTQPVINMNPMNQQFVAIPAVFNPQMVMPQYVFQQQQQMQIVSAGGNIPGNVQQCIPRSAVDFSTSNPAICALANTQIQDPLNSIVNSTVSASRSSVISMNSSPEISSVSDKINKFRNSLESNSLNLEGIVTLMDKTSNVSIDKSYNIPRSLESNNANIVNVTNLDNSLASIDLTEEDENKDDKDISSTSDPDSNISSEGLDNEIPLDIVEHNIEEDEKKEEENKDENELNKACQTTLTDEKDDEKDESFNSESAENDIEREIIIGSAHPIFHQNQTDNITSNNDYERLQTNIECSSLSELQNDPNITVLEMDEDAMNFILPNDFMQSGHSIISKENEIECDTDANTRTDILINDEKQNDNHDNIIVGAPDYEEDNIDEKYDEECVSRESLNIRADERMPPRGELSEQESNGASEVGWGSRIYQEGSSGMSTSYDLLARESWEASDCSDSEMPPLQSRIQPSLDYNAEDVDEPDPLPEEELENKDNLSTSSFHFSCSLCDQTFRCPKERRVHQTQDHASSSSGSNEKKIDIHADLSKVGEEDSKLDILMDINEVETESKYIVTEEETKTETKEHLLCNTCGELLPSMRQFNIHNKKVHNIQIPNLNLTCKTCNEPFKKRMEFIEHLKQHPLECSICGKQFYKPTNFKMHVKRHSGTRPHKCDICNKTFFAKQKLREHLNIHTGISPIKCTMCDESFKRYSNLVQHRNHHHLKIKKKTREYMCHCGQISHSKSKFDWHKETHEPKPKSCTYCNEKFIHMASLTRHIRRSHNQHYVPDDNRRDENVECKICKGVYLKSSIEAHMTIHSGKRQHVCPICNKEFTTKWNLKLHKWIHAAPSNKPYKCDICQSAYFRESDYVSHMNSHRSVKPYTCNYCGCKFIRKYNCVRHVKEHEAGKSYNCDVCNKSFHRSYYLKEHMRVHTGARPFSCNICGKTSTTKSNHNKHMKIHHAREPVTTEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -