Aful046118.1
Basic Information
- Insect
- Agonum fuliginosum
- Gene Symbol
- -
- Assembly
- GCA_947534325.1
- Location
- OX384033.1:32388842-32390669[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.043 6.1 8.9 0.5 3 22 200 219 198 220 0.89 2 12 0.00039 0.055 15.4 4.2 2 23 226 247 225 247 0.98 3 12 0.0013 0.18 13.8 0.2 2 23 278 300 277 300 0.96 4 12 0.048 6.8 8.8 2.5 3 23 308 328 306 328 0.98 5 12 0.011 1.6 10.8 1.4 1 23 334 356 334 356 0.98 6 12 0.00019 0.027 16.4 1.6 1 23 380 402 380 402 0.97 7 12 7.1e-07 0.0001 24.0 0.1 1 23 408 430 408 430 0.95 8 12 1.1e-06 0.00015 23.5 0.8 1 23 435 457 435 457 0.98 9 12 0.00019 0.027 16.4 2.2 1 23 466 488 466 488 0.97 10 12 3.4e-05 0.0048 18.7 1.4 1 23 494 516 494 516 0.98 11 12 0.0015 0.21 13.6 1.1 1 23 522 544 522 544 0.95 12 12 0.0025 0.36 12.8 3.0 1 23 550 573 550 574 0.96
Sequence Information
- Coding Sequence
- ATGATATCTATGTTCAACAAAATTGTGATAGAAACAGAGAGTCCAGTTTCTCCGAAAACTTCTCAAATAATTAGAATTCTGGATTTATTTGAATATTTCATGCCAATAAAGATATGTGATAAGTTTTCAAACATAGTTTGCAATGAATGTATTAAAAATGCTCAAGATGTTTTCATATTTAAAACCAAAGTTAAAGAAATTGATAGTTGGCTTAATATCAATGTTAGTAATCTAAAAATGGTAAAATGTAATGCCAAGAAAACTAAAGAGTTTCATCAACCGCAGAAAGAACAGATTTACAAGATCAGCAACATGAAAACTGTTAAAGAAAACAATGATTCCAGCAAAGAAAATATCTCATTAGAATCTGAAACATTTAAGAATAATTCAGAATTACAAACACAAATTCCTACCGATGAAACTACCAATAAAAACACAGAAACAACTATCGTGAATGAAGATTCAATTACTGACTTACCAGTACAAAATGAAATTATAGATATACAGGATGATGACTATGTTGACCAAAGAAATTTCGAAGCGGTCAAAAAATCATTGCCACAACATTTAAAAGACCACGATTACGATTTGATTTTCTGTGACTTTTGCGACCAATACTTTCCTGATCAGTATTCATACAATCAACACGACAAAATACATACTATTAAAAAATCTAAATGTAATATTTGTAATGTATACTTTTGCAGAAAAACAGCCTATACACAACATATGAAAAGTCATGCGAGGAAAGCAGCGCAACATAAAATGCCTGTCAATATAAACGATGCATTTTTCACGTTTGTAATGAACACAGAGGGCGAAAAATCTATTACGTGTGAATTATGTGGAGGGGAATTTAAACAATTTCGTTCTATTGAAAAACATATGAGAATTGCACATCTAAAAGGTTTTTTATTTGGATGCCACTTTTGCGGAGAAGGATTTCACGTACGATTAAGTTTAATGGAACATCTAAAGTCTCACATTACTTCTGATCCGTATTCTTGTGCGCATTGCACCGAAACATTTAACAAAATAACTGATATTACTAGCCATGTTAAAATACATAAAGAAGATCCATTATTAATAAATGAAATAAAAGAAATAACTTCTGAAAAGCAAGAAGATAATGGACAATTTATATGTTCGTTCTGTGGAAAAACAGTGTCTGATAAGAAAAAATTAACTCTTCATTTTAAAATACATACTGGTGAGAAAGCATTTTTATGTCAATTATGCGGTAAAGCATTTGTGACGTCAGCCCAGTTAACAGTTCATATACGCGTTCATGATGTTAATAAATTCGAGTGTAACATCTGTGGGCAAAAATATAGACAACCTCAATCATTAAAAGAACACTTGAAAACTCACAATAGCGAGAATAAAAATAAATTCCATGAGTGCACTTTATGTAATAAACGTTTTAAAATAGCTCCCAGTTTGCGACTGCATATGAAATATCACAACAATGAAGATCTCTTCCAGTGTACTGTTTGTGAAAAAGCTTTTGTAACACGATCCAGATTAAAACTACATTTTAAAATTCATACTAACGATAAGCCTTATGCTTGTAGATACTGCAATAAGGATTTTATGAATAAATTAAATCTTACTTATCATGAAAATGCCCATGAAGGAAAAAAACCGTATACTTGTGTTATCTGTGATATGGCTTTTACAAGACCTTATTGTGTAATGCAACATACCATTAAAAAACATCATATTTCTAAGTCACAATATATTGCTCAGTTTAGTAATTCGATAAAAAATGTATAG
- Protein Sequence
- MISMFNKIVIETESPVSPKTSQIIRILDLFEYFMPIKICDKFSNIVCNECIKNAQDVFIFKTKVKEIDSWLNINVSNLKMVKCNAKKTKEFHQPQKEQIYKISNMKTVKENNDSSKENISLESETFKNNSELQTQIPTDETTNKNTETTIVNEDSITDLPVQNEIIDIQDDDYVDQRNFEAVKKSLPQHLKDHDYDLIFCDFCDQYFPDQYSYNQHDKIHTIKKSKCNICNVYFCRKTAYTQHMKSHARKAAQHKMPVNINDAFFTFVMNTEGEKSITCELCGGEFKQFRSIEKHMRIAHLKGFLFGCHFCGEGFHVRLSLMEHLKSHITSDPYSCAHCTETFNKITDITSHVKIHKEDPLLINEIKEITSEKQEDNGQFICSFCGKTVSDKKKLTLHFKIHTGEKAFLCQLCGKAFVTSAQLTVHIRVHDVNKFECNICGQKYRQPQSLKEHLKTHNSENKNKFHECTLCNKRFKIAPSLRLHMKYHNNEDLFQCTVCEKAFVTRSRLKLHFKIHTNDKPYACRYCNKDFMNKLNLTYHENAHEGKKPYTCVICDMAFTRPYCVMQHTIKKHHISKSQYIAQFSNSIKNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -