Aful043173.1
Basic Information
- Insect
- Agonum fuliginosum
- Gene Symbol
- -
- Assembly
- GCA_947534325.1
- Location
- OX384043.1:26312684-26314958[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.5e-06 0.0005 21.8 0.9 1 23 286 308 286 308 0.96 2 11 0.055 7.8 8.6 1.4 1 23 314 336 314 336 0.98 3 11 3.4e-06 0.00048 21.9 1.0 2 23 386 407 385 407 0.97 4 11 3.1e-05 0.0044 18.8 1.0 1 23 413 435 413 435 0.99 5 11 4.1e-05 0.0058 18.5 5.6 1 23 441 463 441 463 0.98 6 11 0.0019 0.27 13.2 0.3 1 23 467 490 467 490 0.91 7 11 0.0013 0.19 13.7 0.6 1 23 497 520 497 520 0.95 8 11 1.1e-05 0.0015 20.3 1.7 1 23 532 554 532 554 0.98 9 11 5.8e-05 0.0081 18.0 1.6 2 23 569 590 569 590 0.97 10 11 0.044 6.3 8.9 7.2 2 23 597 618 596 618 0.96 11 11 1.1e-06 0.00015 23.5 1.7 1 23 624 647 624 647 0.96
Sequence Information
- Coding Sequence
- ATGTACTGTTTTTCACAAATTTGTCGACTTTGTCTACGCAAATGTACAGATGAACTTATTAACTTAAATACTTTAGATCACGATAGCGTAAAAATTCATGAAAAACTTAAATTTTGTGTGCCAGAAATCGTTTCTGATGATACACAGTTACCAGAAAATGTGTGTAATCAATGTAAATTGTTCTTGCATCAAATTTTTACGTTTAAACAGATGTGCATAGATAACACAAATATATTATTCAAGTATATAGACCAACTAGCTGGGAATTTTAAATCAGAGCATCATCATAAACTAGACTTATTTGTCGCAATGAATGACGTTAATAATACAAAACAAACTGATGTCGCCATAAACGACGTAGATAATACAAAACAAAGTGAAGAACCTCCAGAAACTAAAAAACAGTTTTCTGAAGGCACTTCAATATTCAGCATAAGCTTGAACCAATGGGACCTATTCGAAACTAAATATACATGCCGTTGTGTAAAAGAATACAATTCTTTCACCGAAAACACTTCACATTTATGTCGAAATTGTGAAGGGGAACTCCATGGCTTTCAGTTATCAAAAGTCAAAGTTGGCATCGCTGAAAATCGCTATAACAACATTGTAAAACAAAACCAAGTTGATAGCGACGATGGTAACTCGATTATTTCGAATGACATCACAGAAAGCAATGCTAAATATGAAAAAGGATTCGATTATAACGATTTTTTACTGAGCAAAGTTCATGTTAACGGAGTTAAAAAACAGATTGATGTACTGAGCGATGAAAATGATGTCAGTTTTGAACAAGAGGAGGATATTAAACCTGATATTAAGTTATTCAGTGGGCGTAAAAGATTAGAAAAAATATTTCAGTGTCCTTTATGTGACAAAAAATATACCAGGCGGTATAATCTGTATGCTCATTACGCTGGACATCCAGACAGTAAATTCTTCTACTGCGACAAATGCAGAAATAAATACATAGACGAAAATGAGTATAATGATCATCAACTGAGACACGAACGATCTGAAATAAAACATGAGCCAGGCATCAAACAAATAATCAAATCCTTCCCTGATTCAAATGCTTCTGATGACGAAATCGAAGGGAAAATTATATCTCCTCGAAAAATAAAACAAGAACTGAACAGCAGCACTGAAAGTTTAACTTGCAGTACATGCGACAAAGTTTTCGAGCACAAATCGCTTTTAGCGATCCATCTAATGACCCACGCTGGAAAACAAGAATATAAGTGCAAGGTTTGTGGAGAAGAATTTTTCCGGATAGAAAATTTCAAGGCACATAAGAAAGTGCATCTGTTAAATAGGAAATATCAATGCGACCAATGTCATAAGAGCTATGACTATAAATCAAATTTACTCAGACACAAATTTACACATGGAGGTAAATATTTGTGCTCCATCTGCAGTGCCCAGTTCGCAAGAAAAGAAAATTTAGTCGACCACATTTTCCAGAAGCATACTAAATCAAGTAAAGAATTTCCTTGTTCAAAATGTACCGAAGTATTCGGTCACATGGACCAACTAAAGTCACACGAATTATCCGCGCATTCACACAAGAAGAATATTCCCAATTTATCTAAATATACTTGCAAAATTTGCAATAAAACCTTCAGCAGTTACGATGTTTTAGAGACACATGAAAAAAGGCACGCTAAAAGAACAGACAAGAAAAAAGCACAGGCCACAAGTAATTATTGCCAAATTTGCGACAGAACTTTCAGCATTAAGACCAATATGGGCAAACACATGAAGACGCATGCTAGTGGAAAAATTATCCACTGTAGCGTGTGCCATACTAAATTTACCAATAGATTTTTGATGAGGCAACACTTTAAAACACACTCTAAAGACCTTCAGTTTAAATGTGAGTTGTGTGGCAAAACGTATGTAAGTAAAAGTAATTTACACCGACATGTGGAAATTACTCATGCCCATTAA
- Protein Sequence
- MYCFSQICRLCLRKCTDELINLNTLDHDSVKIHEKLKFCVPEIVSDDTQLPENVCNQCKLFLHQIFTFKQMCIDNTNILFKYIDQLAGNFKSEHHHKLDLFVAMNDVNNTKQTDVAINDVDNTKQSEEPPETKKQFSEGTSIFSISLNQWDLFETKYTCRCVKEYNSFTENTSHLCRNCEGELHGFQLSKVKVGIAENRYNNIVKQNQVDSDDGNSIISNDITESNAKYEKGFDYNDFLLSKVHVNGVKKQIDVLSDENDVSFEQEEDIKPDIKLFSGRKRLEKIFQCPLCDKKYTRRYNLYAHYAGHPDSKFFYCDKCRNKYIDENEYNDHQLRHERSEIKHEPGIKQIIKSFPDSNASDDEIEGKIISPRKIKQELNSSTESLTCSTCDKVFEHKSLLAIHLMTHAGKQEYKCKVCGEEFFRIENFKAHKKVHLLNRKYQCDQCHKSYDYKSNLLRHKFTHGGKYLCSICSAQFARKENLVDHIFQKHTKSSKEFPCSKCTEVFGHMDQLKSHELSAHSHKKNIPNLSKYTCKICNKTFSSYDVLETHEKRHAKRTDKKKAQATSNYCQICDRTFSIKTNMGKHMKTHASGKIIHCSVCHTKFTNRFLMRQHFKTHSKDLQFKCELCGKTYVSKSNLHRHVEITHAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -