Aful047993.1
Basic Information
- Insect
- Agonum fuliginosum
- Gene Symbol
- -
- Assembly
- GCA_947534325.1
- Location
- OX384042.1:21328730-21330788[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.67 94 5.2 0.6 2 19 223 240 222 243 0.91 2 14 0.0096 1.4 11.0 1.5 1 23 277 299 277 299 0.96 3 14 0.0071 1 11.4 1.3 1 23 313 335 313 335 0.96 4 14 0.022 3.1 9.9 5.9 2 23 356 377 355 377 0.93 5 14 2e-05 0.0029 19.4 0.1 2 23 384 405 383 405 0.97 6 14 0.00083 0.12 14.4 1.7 3 23 412 432 411 432 0.99 7 14 0.00044 0.062 15.2 0.3 1 23 441 463 441 463 0.92 8 14 0.0073 1 11.4 5.3 1 23 468 490 468 490 0.97 9 14 0.077 11 8.2 1.3 1 23 495 517 495 517 0.94 10 14 7e-06 0.00099 20.9 2.2 1 23 523 545 523 545 0.98 11 14 8.3e-07 0.00012 23.8 1.1 1 23 551 573 551 573 0.99 12 14 0.0007 0.099 14.6 3.9 1 23 579 603 579 603 0.98 13 14 2.8e-05 0.004 19.0 0.5 1 23 609 631 609 631 0.98 14 14 2.4e-05 0.0034 19.2 7.3 1 23 637 659 637 659 0.97
Sequence Information
- Coding Sequence
- ATGGATGATCAGATTGTTCTGCAATTGCCAGATGATGTACACAAATTATGTCGTACCTGCATGACAGTTACGGATAACGTGTTAAATCACGATATTGTACTTTTGGATTACAACGAAAAAACTGTTGCAGGCGATATGTTCCAGTTTTGTTTGTCAAATACTATAGAATTTGAAGATGGACTACCGAAATCAATTTGTGATGAATGCGCAAGTAATTTAGAACTTTTTTACAATTTTAAACAACAATGTGAACAAACCGAAATAAACTTAAGAAAAATTTTAAATTTGCCTTCTAAAATTAAAACCGAAGAACTGCAAAAACGTAGCATACCAAGTTTGAGTACTGCAAAGCCTATTATTGGAGGTGTTGAAATACATAGTGGCGGCTCATTTGAAAATTACATAGATAATTCTGTAGAAGTAATTGAAGAAAGTGAAATTACAGTAGAAACATTACAAAAAATTAGAGCATGTAATAGAGGAAACAATAATCAAAGTGCAGACAATCTTTGCTCATATAGTGATATTATTTCACTAATTGAAGAAAGAAAGGAAGCAGCAAGAAGGAATGAAGAGAACAATAGTTCCCGTATTGAAAATATAAGAACTTCTGGTACGAATATAAAGGAAGAAATATTGAGTGATGAAGACAATAGTGGAACAATCCGTTGTAAACTATGTGATCAATATTTTGATAGCACCTTAGAATTCAGCAGACATTCACAATTTTGTAAAAATAAAAATGTGTTAGAAAATATTCTTAAGTTAGAAAATTCTTCTATAGAAGAAATAGAATTATGCCAAGATGAAAATAGCGATTTATTTCCACATACGTGCACATTATGTGGAAGCAAATTTAAAACGCGACAAGGAAAAAATGCACACATGGCTGCGCATGAAAAAGTTGTAGAAACGGCACCCTCAAAAGACGCTCCATATACATGCGATTTGTGCAATAAAATTTTTATGACGGAACCAAAATTATTGACACATTTTTATAAACATGCTTCTCAAAATAAATCTGAATTAGAATCCAATGATGCAATAATTAATGAGAAAAATTGTGTTTGTTCATATTGTAATGAAAACTTTGACTCCAAAGATAGTTTAAAAGAACACTGTAAAAGACACACAAAAACTGGGAAAATTGTATGTGAAATTTGTAACACTGAATTCGTAGGAGAATCTAATTTAGTTAGGCATTTAAGAAAACATGATATACATATTTTATTATGCAAAATATGTTTAAAAAGATTTGATAATCTTCTTAAATTAAAAGAGCATATGAAAACACATTTAATCGAAAGTATTAAAACTGTGTTCAAGTGCCCAATTTGTAAAGAAGAATTTTCAGATGTAGAATCTTTAAAATTACATTCAACAGATCATTTAAATGATGTGTACGAATGTACAAAATGTAAAAAGACTTTTCATAATAAGGTTTCCTACGATAACCATGAAAAGCAACATATTGAACCAAGATTCCTGTGCTCATTATGTGGAAAACAATATTTTTCAAATGTAACACTTGCATGTCATATACGAGCGCACAATAATGAGAAACCATTTTCATGTCCACATTGTAAAAAAGGTTTTTCATCGAGAGCAACATTGTCAGTTCATAAAAGAATTCATTCTGCTTTTAAACCCTACGTTTGTTCTTACTGCGGATATAGTTGTCGACAAAGTGGAGATTTAGCAATGCATATTAGAACGCATACTGGGGACAAGCCTTATAAGTGCACTTTTCCAAATTGTGAACGCAAGTTTACAACATCAAGTCAAAGAAAAGAACATTACAGAAGGCATACCAATGAGAGAAACCATAAATGCCCGATATGTGGAAAGGCATTTTTAGAATCAAAAACTTTAAAAGTTCACATGCTAGTTCATACAGGAGAAAAGCCTCATTCTTGTGATATTTGTGGTAAAAAATTCAGAAGAACGCATCATCTGTCTAATCATATGAAAGGACATAAGGAACACATTCTTGGAATTTAG
- Protein Sequence
- MDDQIVLQLPDDVHKLCRTCMTVTDNVLNHDIVLLDYNEKTVAGDMFQFCLSNTIEFEDGLPKSICDECASNLELFYNFKQQCEQTEINLRKILNLPSKIKTEELQKRSIPSLSTAKPIIGGVEIHSGGSFENYIDNSVEVIEESEITVETLQKIRACNRGNNNQSADNLCSYSDIISLIEERKEAARRNEENNSSRIENIRTSGTNIKEEILSDEDNSGTIRCKLCDQYFDSTLEFSRHSQFCKNKNVLENILKLENSSIEEIELCQDENSDLFPHTCTLCGSKFKTRQGKNAHMAAHEKVVETAPSKDAPYTCDLCNKIFMTEPKLLTHFYKHASQNKSELESNDAIINEKNCVCSYCNENFDSKDSLKEHCKRHTKTGKIVCEICNTEFVGESNLVRHLRKHDIHILLCKICLKRFDNLLKLKEHMKTHLIESIKTVFKCPICKEEFSDVESLKLHSTDHLNDVYECTKCKKTFHNKVSYDNHEKQHIEPRFLCSLCGKQYFSNVTLACHIRAHNNEKPFSCPHCKKGFSSRATLSVHKRIHSAFKPYVCSYCGYSCRQSGDLAMHIRTHTGDKPYKCTFPNCERKFTTSSQRKEHYRRHTNERNHKCPICGKAFLESKTLKVHMLVHTGEKPHSCDICGKKFRRTHHLSNHMKGHKEHILGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -