Aful051161.1
Basic Information
- Insect
- Agonum fuliginosum
- Gene Symbol
- prdm10_1
- Assembly
- GCA_947534325.1
- Location
- OX384032.1:34214873-34217998[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.6 3.6e+02 3.4 3.4 2 23 243 264 242 264 0.95 2 14 0.0022 0.32 13.0 0.3 1 23 273 296 273 296 0.96 3 14 0.00014 0.02 16.8 2.7 1 23 408 430 408 430 0.98 4 14 0.02 2.8 10.0 0.3 1 19 434 452 434 452 0.98 5 14 2.1e-05 0.003 19.4 3.6 1 23 463 485 463 485 0.96 6 14 0.0065 0.91 11.6 4.2 1 21 489 509 489 510 0.93 7 14 0.00059 0.084 14.8 5.8 1 23 520 543 520 543 0.98 8 14 0.0072 1 11.4 0.1 3 23 557 577 555 577 0.96 9 14 6.5e-05 0.0091 17.8 2.2 1 23 582 604 582 604 0.98 10 14 2.6e-05 0.0036 19.1 1.5 2 23 610 631 610 631 0.97 11 14 3.8e-06 0.00054 21.7 1.6 1 23 636 659 636 659 0.97 12 14 8e-05 0.011 17.6 1.0 3 23 666 687 665 687 0.97 13 14 0.0032 0.45 12.5 3.1 1 23 692 715 692 715 0.93 14 14 0.0001 0.014 17.3 2.4 1 23 720 743 720 743 0.98
Sequence Information
- Coding Sequence
- ATGGATATAACAGTTGCTGAAGGATTTACTGTTGGATTTACAAATAAAGAAGATAACTTTATTTTACCAAATACATTAACAGGTGTTATCACATTTATTACATTATTTTTTTTAAATATTCTATTTTCAGGTTGTTCTATTTGTGCGGAGGAACATGAGACTGAAAAATGTTCAATCTTTGAAGATTTAATTCATATAAACGATTCAAAAGTGTTACCCAGAGCTTTTCTAACTTTGCCTGCTGATTTAAAACTTGAAACTTTGTCCGATGGTTCTAATACTGTCATTGCAACAAAAACATTCAGCAAAGGGACCCAATTTGGACCTTATCAAGCCGAAAAATTTTACTCTTTGAATCCTTTCGATAATTTTCCTATTAAGATTTTTGGTGATTCAGAAAATATTCTACCAGACTGTTATTTAGATTCTAGAAATGAAGAAAAATGTAATTGGATGAGCTATATTTTGCCTGCTAATAATTTTGAGGAACAAAACATGATATGCTATCAGATTAAACTAGATATATTTTATTCGGTAATTCGAGACATTAAGCCAGGAGAACAATTAAAAGTTTGGTATTCGACTTATTATGCTGCAAAAATGGGATCTAAAACTCATATTCCAAAAGAAAATGAAGAAGTTGAACCCGATGAACATGAAAAGATTCAAAAAGTAGCAGAAAAATTACCAGCAAAAAAATTAGGAGCAGTAGAAAGACAAACTTGGTGTTGTAAAATTTGCGGTCACACTGAAACAAATGTTGTGAAATTTGCTAAACATTTGCAAAAACATTACTTGAAAATGATAAAAAATTCATTTGTTTGCAATGTGTGCAACGGTGGTTTTAGCACGGAAAAGGGATTAAAATTGCATAGAAAATATGCACATATTATTTTCACAGACCATAAGCCGTGCGATATGGAAAATTTTATTGCAAAGCCAGAACCATCAAAACCTGATTTACTTGAACCATGTCTACCTGCACCAATAGACAATCTAATGTCGGTTACTTTAACTGAATCAGACCAATTATTAATGTTAGATCAATTAGGTATACCAAATACAGGAATATACAATGACCTCAATGATGCTGAAACATTGCGAGCAATTTTATTAGATGATAATACAAAAGCTAGTAAAACTGCCCAAGAAAAAAGCATCGCAGATTTTAGTTTAGAATTTGTTGAAAGCAACGATATTATACCAAAGTTACCCGCCCCTTACTACTGTGATATTTGTAATAAATTATTTAATAATTTACAATATTTGTATAGACATTTAAAGAAACATACAGGTGAATATACTTGTGTACAATGCTTAATAGTATTTACTCGAAGAGAAAATTATTTGCGCCATCCGTGTTTTACTGCCAATACACTAATGAAATATAATTGTTCTTATTGTTCGAAATCGTTTTATCAAAAAAAATATTTAAGAAGACATATTGTAAACCATCTAGAAAAATACCCTTGCAAAAAATGTGGAAAAAAATATAAATCAAAGTATGATCAAGAGAATCATAAATGTTCGCCAATTGCAAACACTCAAAAAGTGTTATATCCTTGCAGTCATTGTAATCGCAAATTTCGTTTAGAAGTATATTTACAAAGGCATATCAAAAGATGTCATTTAGATAAAATAAAAGATCAGACAGGACAGCCAGTTATTTGTGAAATCTGCGCAAAAACTTATCAAACTCCCCAAGCATTACGAATACATAAAAATCAACATGCAGAACCAAAATACGAATGCAGAATATGTGACAAAAAATTCTATAGATATGATTTATACAATAATCATTTATTAAGACATGGAACAGAAAATGAAGTATGCGATTTATGTGATAAAAAATTTAAAACTAAAATTAGCTTGAAAGAACATCAAAAACTACACAATAATGTTGCATACTCATGTGAATATTGTGGAAAACAATATACAAGAAAAAGGGGTTTGAAAGAACATCAACAAAGAATTCATTCAGAAGATCCTGTAGATTGTTCAGAATGCGGCGAAACATTTAAAAATAATTTTCTTCTAATAGATCACAAAAAGACAAAACATACACAAGCATCTTTTGACTGTACAATTTGTAATAAAATATTTTCATTACATCGATTATTAACACGACATAATAAACTTTATCACAGTGATATCGATTATTCGTGTCAATATTGTTCCAAAAGTTTCAAAATGATTGGCTCACTTCGACAACATTTAAAGAAATCTCATTTAGAATATAAAGATCAGTGGAATAAATCAGAAACTATTGTCAATTTGAATAAAAATATAATTATGAAAAATGCTAAATATGTAAATATCACTAATAATTCTAAAGAACAGACCGAAGTATTGTTAAGTATTCCTGAAACAAATCAAGATGCAGGAAAAAGTGTGTACATTCTAGAGAACGGAACGATGGAAACTTCTACTGTGGATATGACAGATATTGAAGACAAAGAAATATTGCTGAGTGTGAAAGAAACAAATAAAATTAATACAAATAAATCCGTAACTGACTTATTATTACCTAACGCGGATATTCCTACATATGATTGCTCAAAAACTAATAAAATTATAATACCAGAACAGGCAACTAATATATCTACACAAAATCAGGATGTACCAGAAAATGAAGTATTATCTGTAGCTGAAACGGAGCAACAAATAACTTTAGGAAAAAATGCATACATTTTGGAAGATGGGACAATTGTCCAACCACAGGAGCAAGGAAATCTTATGATTTATATTTTAAATGAACAGTTAAACAACAATTAA
- Protein Sequence
- MDITVAEGFTVGFTNKEDNFILPNTLTGVITFITLFFLNILFSGCSICAEEHETEKCSIFEDLIHINDSKVLPRAFLTLPADLKLETLSDGSNTVIATKTFSKGTQFGPYQAEKFYSLNPFDNFPIKIFGDSENILPDCYLDSRNEEKCNWMSYILPANNFEEQNMICYQIKLDIFYSVIRDIKPGEQLKVWYSTYYAAKMGSKTHIPKENEEVEPDEHEKIQKVAEKLPAKKLGAVERQTWCCKICGHTETNVVKFAKHLQKHYLKMIKNSFVCNVCNGGFSTEKGLKLHRKYAHIIFTDHKPCDMENFIAKPEPSKPDLLEPCLPAPIDNLMSVTLTESDQLLMLDQLGIPNTGIYNDLNDAETLRAILLDDNTKASKTAQEKSIADFSLEFVESNDIIPKLPAPYYCDICNKLFNNLQYLYRHLKKHTGEYTCVQCLIVFTRRENYLRHPCFTANTLMKYNCSYCSKSFYQKKYLRRHIVNHLEKYPCKKCGKKYKSKYDQENHKCSPIANTQKVLYPCSHCNRKFRLEVYLQRHIKRCHLDKIKDQTGQPVICEICAKTYQTPQALRIHKNQHAEPKYECRICDKKFYRYDLYNNHLLRHGTENEVCDLCDKKFKTKISLKEHQKLHNNVAYSCEYCGKQYTRKRGLKEHQQRIHSEDPVDCSECGETFKNNFLLIDHKKTKHTQASFDCTICNKIFSLHRLLTRHNKLYHSDIDYSCQYCSKSFKMIGSLRQHLKKSHLEYKDQWNKSETIVNLNKNIIMKNAKYVNITNNSKEQTEVLLSIPETNQDAGKSVYILENGTMETSTVDMTDIEDKEILLSVKETNKINTNKSVTDLLLPNADIPTYDCSKTNKIIIPEQATNISTQNQDVPENEVLSVAETEQQITLGKNAYILEDGTIVQPQEQGNLMIYILNEQLNNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -