Aful014190.1
Basic Information
- Insect
- Agonum fuliginosum
- Gene Symbol
- -
- Assembly
- GCA_947534325.1
- Location
- OX384039.1:17773103-17777137[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.058 8.1 8.6 2.0 1 23 278 300 278 300 0.93 2 13 0.0071 1 11.4 0.6 1 21 305 325 305 329 0.92 3 13 0.00026 0.036 16.0 0.6 1 23 363 386 363 386 0.95 4 13 2.3e-06 0.00033 22.4 0.9 1 23 392 414 392 414 0.98 5 13 0.0027 0.38 12.8 0.3 1 23 422 445 422 445 0.89 6 13 3.3e-07 4.6e-05 25.1 3.6 1 23 451 473 451 473 0.98 7 13 2e-05 0.0028 19.5 0.7 1 23 479 501 479 501 0.97 8 13 0.001 0.14 14.1 2.9 1 23 507 529 507 529 0.97 9 13 2.5e-07 3.6e-05 25.4 0.9 1 23 535 557 535 557 0.98 10 13 5.4e-06 0.00076 21.2 3.4 1 23 563 585 563 585 0.99 11 13 0.42 59 5.9 6.1 2 23 592 613 591 613 0.97 12 13 0.00058 0.082 14.9 3.0 1 23 619 641 619 641 0.99 13 13 2.2e-07 3.1e-05 25.6 1.5 1 23 647 669 647 669 0.98
Sequence Information
- Coding Sequence
- ATGGAGGAACAAGTTTTATTGTACGACTCAACATTTTGTAGGCTTTGTGGAGAAGAAAACGAAAATGGAACGTTATTATTCGGGTCCGATGAAATTGAACAAGATTTATGTGCATCTATAAACCGATATCTGCCTTTGAAGGTACAGAACGATGGAAAACTACCTCGTACCATTTGCCCTGGTTGCAATATTCAACTCGCAGCAATGGTACAATTCATGGAACTTATTGTTATGGGGCAAGAGAAAATTCGTGAAATGTGGAGAAATCAACAAGATTTATTACGACGAAAAGAAAAAAATAAACAAATTTTGGAACAAACATTACTTGATGCTGTTGATCAAAATATGGAAATTCTTATCCAAATTATGCCTGACGGTACATTATATGCTCCTGATCATGAAATGACGCTAAAAATGGAAGGTTTAGAAAAACCAAGACGTAAACGTGGTAGACCACCAAAACCACCACCAAGTACTGTAATTATCGAAGAAGAAGAAAAAAAGTATGAAGAACCTGAACCAGAAGATGATTTAGAAGACGACGCAGATGGCAGAAAACGTCGGAGAAGAAAAGTCCCTTCTAGATTTAGAGAAGCAGTGCAGGGTAAAGAATTAGAAAGAATATTTCGAGAAGAAGGAGTAATAGATGAAGAAGAAGATTCGGATGACGACGATGTATCAGATGAAAAAAATATTCCGATATCTGAAGAAGCTGGTGATGAAATAATAGGTCATTTGGAAAATAAGGACGGACAAGATTTAGGCGAACTTGTAATAATAAATAAAGCTAAAAACACCCGACTAAAAGCAAAAAGTCGTCGACGAAAGAAATTCACTTGCGAAATATGCGGTCGAGGTTTCATGCATTATGGCAGATATTTAGTTCACAAAACTTACCATAAAGGTGTAAGATACGAATGCACAACTTGCACACAGCTTTTTAACTCAAAAGAAGAACTAATAGAACATCAAACTCTTACAAACCATACTGGCGAAGGAATAGTAGAGAGTTTAGATAACAAAGTCGAAGAAATTGAAACAATATCACCAGAAAATAAAGCTGAACCAATTTCTCCGGAACACAAGTTTCCCTGTGAACAGTGCGACAAATCGTTTATGTCGAAGCAAAGCTACGAAGTTCATGTCAAAGCTAAGCATGAAGGGCAAAAACCATTCCAGTGTGATAAGTGTGACAAAACTTTTGCATATCAGGCTAGCCTTAAGGGACATATGACATCCCACGAACAGAAATCTGAAAAGGGCTACCCTTGTGACCTTTGCGAAAAAGTCTTTAATCATCCGAGCAGTGTAGTTTACCATAAAGAAGCAGAGCACAATAATGGGAGAAGATTCGTTTGTAACAAGTGTGGGAAAAGCTTTAAACATAAACAGTTACTTCAACGACATCAGTTAGTTCACACCAATGATCGTCCATTTAATTGTAAAGCATGTGGAGCTACATTTAAAACTAGAGCAAATTTGTTGAATCACCAGTCAACGCATACTGGAGTTAAAAAATATTTTTGTCAACAATGTGGACAGCTTTTTGCCCATAAAACATCGCTTACTTTACATTATCGTTGGCATAGTGGACAGAAACCTTATGAATGCAATGTTTGCAAAAAAGCATTTTCACAAAAAGGAAACTTGAGAGAGCACAAGAGAATTCATACTGgggaaaaaccctacacctgcgaattctgcggtcgaaaattcaccacgtcctctcaattcaagcttcacgtaaagcgtcacactggcgaacgtccatggagctgtgaatattgcagtaaaacgttcttgcacaaagatacttggaagtgtcatatgcggcgacatcgcaatgaacgaccgtatcagtgcacgcattgtatgagggatttcactgaacaatgggcgcttaaaaaacatcaacgtctccatactggagaaaagccgtatgtttgtgagatatgtaacaaggcttttgcagattgctcgaatttaacgaagcataagagggtgcatCGGAATATTAAGGAGGAACATCAGACTGTTACCGCAGATGGAAACGTAATATACGTAACTTACCAAGATCCATCGGATTCCAATGATCTTCCAGCTTTAGTTCATATCTTGAACAATCCGGCAGCTACGGACCTAAACCCCGCAAATTCTTTAGCACCACCAACAGAACAAAGTTTTGAAAATAGTCTAATATCTCCAACTGATCAGGCTGCTGAACTAGATGATTTCGATGAAAATACAGGATTACCTTTAGCTACTGGACAGTTACACGTTACGGATGAAGATGGGAATCCAATATATTTTACTGCACAAGACGGCCAACGAATTCGCGTAACATCTTTTGATGGACAAAATTTGCAAGTGTGTATGGATGACGGTACAATAATTCCCATTCAGTTGAATGCTGAAAACGGAAAACCTGTTGCTGTTGAATTAACTGATGATCAGTTAAAAGAAAAAGAATTTAAAATTGATGATCAAATTGTTATACCACAATTGGGTGACCCAAAAGCAAACGAACTTGAACCTGAAGAAGATAGTTTAATGGACCAACCAGTTCAATTTATGACTGAAGATGGACAGAATCTTTGTTTGGTAACAACGTATAATATTGATAGCGACAGCATCAATACTGAGTACCTACCAATTCAAATTACGTAA
- Protein Sequence
- MEEQVLLYDSTFCRLCGEENENGTLLFGSDEIEQDLCASINRYLPLKVQNDGKLPRTICPGCNIQLAAMVQFMELIVMGQEKIREMWRNQQDLLRRKEKNKQILEQTLLDAVDQNMEILIQIMPDGTLYAPDHEMTLKMEGLEKPRRKRGRPPKPPPSTVIIEEEEKKYEEPEPEDDLEDDADGRKRRRRKVPSRFREAVQGKELERIFREEGVIDEEEDSDDDDVSDEKNIPISEEAGDEIIGHLENKDGQDLGELVIINKAKNTRLKAKSRRRKKFTCEICGRGFMHYGRYLVHKTYHKGVRYECTTCTQLFNSKEELIEHQTLTNHTGEGIVESLDNKVEEIETISPENKAEPISPEHKFPCEQCDKSFMSKQSYEVHVKAKHEGQKPFQCDKCDKTFAYQASLKGHMTSHEQKSEKGYPCDLCEKVFNHPSSVVYHKEAEHNNGRRFVCNKCGKSFKHKQLLQRHQLVHTNDRPFNCKACGATFKTRANLLNHQSTHTGVKKYFCQQCGQLFAHKTSLTLHYRWHSGQKPYECNVCKKAFSQKGNLREHKRIHTGEKPYTCEFCGRKFTTSSQFKLHVKRHTGERPWSCEYCSKTFLHKDTWKCHMRRHRNERPYQCTHCMRDFTEQWALKKHQRLHTGEKPYVCEICNKAFADCSNLTKHKRVHRNIKEEHQTVTADGNVIYVTYQDPSDSNDLPALVHILNNPAATDLNPANSLAPPTEQSFENSLISPTDQAAELDDFDENTGLPLATGQLHVTDEDGNPIYFTAQDGQRIRVTSFDGQNLQVCMDDGTIIPIQLNAENGKPVAVELTDDQLKEKEFKIDDQIVIPQLGDPKANELEPEEDSLMDQPVQFMTEDGQNLCLVTTYNIDSDSINTEYLPIQIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470183;
- 90% Identity
- -
- 80% Identity
- -