Basic Information

Insect: Agonum fuliginosum
Gene Symbol: -
Assembly: GCA_947534325.1
Location: OX384047.1:7530798-7536909[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00069 0.097 14.6 5.0 1 23 275 297 275 297 0.97

2 12 1.4e-05 0.0019 20.0 0.3 1 21 304 324 304 325 0.95

3 12 5e-08 7e-06 27.6 1.3 1 23 332 354 332 354 0.98

4 12 0.0012 0.17 13.8 5.2 1 23 360 382 360 382 0.98

5 12 5e-06 0.0007 21.3 0.4 1 23 388 410 388 410 0.95

6 12 1.8e-05 0.0026 19.6 0.4 1 23 416 438 416 438 0.97

7 12 0.029 4.1 9.5 1.8 1 23 444 466 444 466 0.98

8 12 3.4e-06 0.00047 21.9 0.3 1 23 478 500 478 500 0.95

9 12 0.00057 0.081 14.9 6.1 2 23 507 528 506 528 0.97

10 12 0.00016 0.023 16.6 0.3 2 23 534 555 533 555 0.97

11 12 2.6e-06 0.00037 22.2 0.8 1 23 561 583 561 583 0.98

12 12 0.024 3.4 9.8 4.3 2 23 590 612 589 612 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00069	0.097	14.6	5.0	1	23	275	297	275	297	0.97
2	12	1.4e-05	0.0019	20.0	0.3	1	21	304	324	304	325	0.95
3	12	5e-08	7e-06	27.6	1.3	1	23	332	354	332	354	0.98
4	12	0.0012	0.17	13.8	5.2	1	23	360	382	360	382	0.98
5	12	5e-06	0.0007	21.3	0.4	1	23	388	410	388	410	0.95
6	12	1.8e-05	0.0026	19.6	0.4	1	23	416	438	416	438	0.97
7	12	0.029	4.1	9.5	1.8	1	23	444	466	444	466	0.98
8	12	3.4e-06	0.00047	21.9	0.3	1	23	478	500	478	500	0.95
9	12	0.00057	0.081	14.9	6.1	2	23	507	528	506	528	0.97
10	12	0.00016	0.023	16.6	0.3	2	23	534	555	533	555	0.97
11	12	2.6e-06	0.00037	22.2	0.8	1	23	561	583	561	583	0.98
12	12	0.024	3.4	9.8	4.3	2	23	590	612	589	612	0.96

Sequence Information

Coding Sequence: ATGATAGAATTTGCTAAAATCTGCAGGCTATGTGTTAGTGATAACAATACACTAATTAATGCTTTATCTTTGGATGAAGATTCTGTTCGATTATGCGATAAACTACGTACAGTTTGTGACATTCAAATAAACTCATCAGATACTCTACCGACCACAATATGCATTCAATGCCAAGAGAAACTTCGACAATTCTACGAATTCAAACTAATGTGTTTACATTCAAACCTGCTGTTAAATCGATACAAGAAAGATCTATCAGCTTCCACTCACTTGGTAAACGAATTCCGCAAGAAATACAACACAGTCTTTGGTACAATTGACATCAAACAAGAAAAGAACAATGATACAGACCTTAACGAAAGTTCTTCGCATTCTAAGAGTAACAACTTTACCGCACCGGCTGATGAAGGCTCTCAGAATGTTATTCCTCAAAGAAAAACTCGTAAAAATGAAGATGGATCTTTTGAAGAACACAATTCTTATGATGCATTTGCTGACACTGGGTTGGAACTTGATGTGCAAGAAGTTGAGGACGTGTTGATTAAATGGAGAGAGAATAAATCTGGCACCAGTACTGCAAACAGCAATGATGGAGAAATCAAATCAGAAGAAAATAATACAGAATCAACGTTCAAAAACATTATTATATCTGAAACTGGACTCACCCAAAACGACCCAAGCTCAACATACAAATCAGAAACGTTAGCTGACACATCCCAAGACGCGTCATCCGGAGACTCAGCCTCAGAATCAGACGAAGACGAAGATTCAGGTGATACAGATTACAAACCAGACAGCCAAGAAAAGCCAGAGCATGCATCGTACTTCTGTCACACGTGCAACAAGCAATACACCAGCAAGCGAGGCCTAACAcgacacgcatcgcgccacacagaaggaaaagaagacttccggtgcgagaagtgtggtaaatccttcacgacagaactcggtcttcggcagcacatcctgaggtactccggagagcggccctacagctgtaaagagtgcggcaaatcgtttactgacaaaccgaacttgtacaaccaccgaagagtgcacagcacggatcgcccgtactcgtgcgatctgtgcggtaagACGTTTAAGTTTGCGAGCTGCAAACGCACGCATTTGAAGTACCATGCGCCTGAACGGCCGTTTTTGTGCAGTATTTGTGGAAAAGCTTTTACATTGAAGATTACGTTACAGAACCATCTTCGGATACATTCGGGTGAACGACCGTTTAAATGCGATGTTTGTGACGCTGCGTTTGCTGATCCGTCTTCTTTGAAGAGTCATCATGTTAAACATACCACTGGACGCCCGTTCCAATGCGAAATTTGCTTCCAAGACTTCAAGTGGGAAAAGTCGTTAAAATCGCACCGCAAACTCCACCAGCGCACAGCAGAACAACTGGCAGAGAAGAGATTCTCTTGTGAGGTTTGCGGTAAACAATTCCGGACTAAGGATTCGCTAGTGAAACACGGCGCGGTTCACAGCGACGCAAGACCGTGGAAATGTGACCTGTGTGGCAAAACATTCAAGTTCCAAAGCTGCTGGAGAACGCACTTGAAACACCACGAAGGAAAACGAGTGGTGTGCACAATctgtggcaagaagtatctcaacaacagcgttctcaacaatcacatgcgccttcacacgggcgagaagccgtttaaatgttcgctttgcgacaaagcgttcgcggacaactcaacactgcgcagccataagatctctcactcgaacatcaaacaacagcgatgtcagttctgtggcctggagttcaagcacagaagttacctcatgttccacATCAAGAAGAAACACAAAGAGGAGCAGGAGCTACAGGACCAGCAACAGCAAATGGAAGACGAGCAGTTAGTGCAATAA
Protein Sequence: MIEFAKICRLCVSDNNTLINALSLDEDSVRLCDKLRTVCDIQINSSDTLPTTICIQCQEKLRQFYEFKLMCLHSNLLLNRYKKDLSASTHLVNEFRKKYNTVFGTIDIKQEKNNDTDLNESSSHSKSNNFTAPADEGSQNVIPQRKTRKNEDGSFEEHNSYDAFADTGLELDVQEVEDVLIKWRENKSGTSTANSNDGEIKSEENNTESTFKNIIISETGLTQNDPSSTYKSETLADTSQDASSGDSASESDEDEDSGDTDYKPDSQEKPEHASYFCHTCNKQYTSKRGLTRHASRHTEGKEDFRCEKCGKSFTTELGLRQHILRYSGERPYSCKECGKSFTDKPNLYNHRRVHSTDRPYSCDLCGKTFKFASCKRTHLKYHAPERPFLCSICGKAFTLKITLQNHLRIHSGERPFKCDVCDAAFADPSSLKSHHVKHTTGRPFQCEICFQDFKWEKSLKSHRKLHQRTAEQLAEKRFSCEVCGKQFRTKDSLVKHGAVHSDARPWKCDLCGKTFKFQSCWRTHLKHHEGKRVVCTICGKKYLNNSVLNNHMRLHTGEKPFKCSLCDKAFADNSTLRSHKISHSNIKQQRCQFCGLEFKHRSYLMFHIKKKHKEEQELQDQQQQMEDEQLVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00029598;
90% Identity: iTF_00029598;
80% Identity: -