Basic Information

Insect: Agonum fuliginosum
Gene Symbol: -
Assembly: GCA_947534325.1
Location: OX384039.1:12798232-12800964[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5.3e-07 7.4e-05 24.4 1.3 1 23 104 126 104 126 0.98

2 15 1.4e-08 2e-06 29.4 0.5 1 23 132 154 132 154 0.96

3 15 1.3e-05 0.0019 20.0 3.8 1 23 160 182 160 182 0.98

4 15 2.9e-07 4.2e-05 25.2 2.3 1 23 188 210 188 210 0.99

5 15 4.3e-07 6.1e-05 24.7 0.8 1 23 216 238 216 238 0.98

6 15 1.5e-06 0.00021 23.0 5.1 1 23 244 266 244 266 0.98

7 15 1.1e-06 0.00015 23.5 0.7 1 23 272 294 272 294 0.98

8 15 3.6e-07 5.1e-05 24.9 2.1 1 23 300 322 300 322 0.96

9 15 0.00023 0.033 16.1 1.1 1 23 328 350 328 350 0.95

10 15 1.2e-07 1.6e-05 26.5 0.4 1 23 356 378 356 378 0.98

11 15 2.5e-06 0.00035 22.3 0.6 1 23 387 409 387 409 0.96

12 15 1.8e-06 0.00025 22.8 2.6 1 23 415 437 415 437 0.98

13 15 4e-08 5.7e-06 27.9 0.2 1 23 443 465 443 465 0.99

14 15 1.1e-05 0.0016 20.2 1.7 1 23 471 493 471 493 0.98

15 15 2.5e-05 0.0036 19.1 1.3 1 23 499 521 499 521 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5.3e-07	7.4e-05	24.4	1.3	1	23	104	126	104	126	0.98
2	15	1.4e-08	2e-06	29.4	0.5	1	23	132	154	132	154	0.96
3	15	1.3e-05	0.0019	20.0	3.8	1	23	160	182	160	182	0.98
4	15	2.9e-07	4.2e-05	25.2	2.3	1	23	188	210	188	210	0.99
5	15	4.3e-07	6.1e-05	24.7	0.8	1	23	216	238	216	238	0.98
6	15	1.5e-06	0.00021	23.0	5.1	1	23	244	266	244	266	0.98
7	15	1.1e-06	0.00015	23.5	0.7	1	23	272	294	272	294	0.98
8	15	3.6e-07	5.1e-05	24.9	2.1	1	23	300	322	300	322	0.96
9	15	0.00023	0.033	16.1	1.1	1	23	328	350	328	350	0.95
10	15	1.2e-07	1.6e-05	26.5	0.4	1	23	356	378	356	378	0.98
11	15	2.5e-06	0.00035	22.3	0.6	1	23	387	409	387	409	0.96
12	15	1.8e-06	0.00025	22.8	2.6	1	23	415	437	415	437	0.98
13	15	4e-08	5.7e-06	27.9	0.2	1	23	443	465	443	465	0.99
14	15	1.1e-05	0.0016	20.2	1.7	1	23	471	493	471	493	0.98
15	15	2.5e-05	0.0036	19.1	1.3	1	23	499	521	499	521	0.98

Sequence Information

Coding Sequence: ATGATAACAGCTTGTACCTCCGTAGAAACATCGAATAATGATGGCTTACCATATAAAATATGTGATGAATGTATCATTAACCTGACTAACGCCTACAAATTCAAACAAAAATGTGAAATATCTGATAATATATTAAGAGCTTATTACCAGAAAAATATAAAAGAAGATAGCACAGCAAATAAACCTAATTCTGCAGTTGTATCAAATGAAAACACAAGTATTAAACAAGTTGACGAAACAAATAAAGCTAACACTGACTCGGAAACCAATCTAGAAACAGAAACTCAGATAGTAAATGAAGGAAACAAATTTGTCTGTAGAATTTGTAACAAAAGTTACAAACAAAGTACTGGATTGCGAGTTCATATGAGATCACATACAGGTGAGCGTCCATTtttgtgcagcgattgtggaagaagtttcatccgatccgacgatttaaatcgtcatatgcgaattcatactggagagactcctttcgtttgtcagacttgtaataaaggttttaaacaacgatttcatttgactgaacaccaaagGGCGCATCAAGGTGTTGCATCTTTTAAATGTTCACTTTGCAAGAAGGGATTTACAAGATATGGGTCtctaagaattcatatgagaacgcatgttgggataaaaaatcatgaatgctccatttgcggaaagaagttcgctgggaccgacaatttggcgaaacatttacgcacgcacacagGAGAACGGCCCCACAAATGCAAAGAATGCGGCCGATGTTTTGCCCAGGCGGACCATctccaaaaccacgaacgaattcattccggcgaaaaaccgtataattgtaatatttgctctaaatcttttacgcaacaaaatggccttaatgtccatcttatgtctcatagtggagaaaaaccattcttgtgcagcgaatgtggaaaaagtttttctcgttttgacgatcttaaaaaacattctcgtactcatactaaagaccggccatatatttgtatcatttgtaataaagattttgcgcaatccacacatttatcagaacatttaaggtcccatggtactgaaaaaccgtatgaatgtcctacttgtggcaaaaaatttgcaagaaatggcacactgcgatcacacttaaaaatacatacggaaagttacgccaaaaaagaacacgtctgttccatttgtaataaacggttttccgtcgcgggttctttaacaaaacatatggtgatccatactaatgaacgcccttttgtctgtagactttgcagcaaaagttttacgcaaaatgttcatttagagacacatatgaaggttcatacgggagagaaagattatgtttgtgaggtttgtgaaaaagggtttactactaattctgggttgactgtccacatgagaactcatagtggagatagaccgtatatttgtaagttatgtgggagaggatgtagcacttccactgttttgaaaatacatatgaggacgcatacgggggagacgccctattcgtgtgaaatgtgtggaCAGACATTCCAACGGTCGGATTTGTTGTTGTATCATAGAAAATCGCATTATATGATGTCGTATGGTCAAAACATAATGGGATAA
Protein Sequence: MITACTSVETSNNDGLPYKICDECIINLTNAYKFKQKCEISDNILRAYYQKNIKEDSTANKPNSAVVSNENTSIKQVDETNKANTDSETNLETETQIVNEGNKFVCRICNKSYKQSTGLRVHMRSHTGERPFLCSDCGRSFIRSDDLNRHMRIHTGETPFVCQTCNKGFKQRFHLTEHQRAHQGVASFKCSLCKKGFTRYGSLRIHMRTHVGIKNHECSICGKKFAGTDNLAKHLRTHTGERPHKCKECGRCFAQADHLQNHERIHSGEKPYNCNICSKSFTQQNGLNVHLMSHSGEKPFLCSECGKSFSRFDDLKKHSRTHTKDRPYICIICNKDFAQSTHLSEHLRSHGTEKPYECPTCGKKFARNGTLRSHLKIHTESYAKKEHVCSICNKRFSVAGSLTKHMVIHTNERPFVCRLCSKSFTQNVHLETHMKVHTGEKDYVCEVCEKGFTTNSGLTVHMRTHSGDRPYICKLCGRGCSTSTVLKIHMRTHTGETPYSCEMCGQTFQRSDLLLYHRKSHYMMSYGQNIMG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01226005;
90% Identity: -
80% Identity: -