Aful012934.1
Basic Information
- Insect
- Agonum fuliginosum
- Gene Symbol
- -
- Assembly
- GCA_947534325.1
- Location
- OX384035.1:37189756-37192131[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 2.2e-06 0.00031 22.5 5.1 1 23 123 145 123 145 0.98 2 23 5.1e-05 0.0072 18.2 2.4 1 23 152 174 152 174 0.98 3 23 2e-05 0.0028 19.5 1.0 1 23 181 203 181 203 0.97 4 23 0.0016 0.23 13.4 4.4 1 23 208 230 208 230 0.96 5 23 0.00048 0.068 15.1 3.3 1 23 236 258 236 258 0.98 6 23 0.00028 0.039 15.9 3.8 1 23 264 286 264 286 0.98 7 23 8.8e-06 0.0012 20.6 3.3 1 23 292 314 292 314 0.95 8 23 0.0007 0.099 14.6 0.5 2 23 321 342 320 342 0.97 9 23 0.00026 0.036 16.0 2.7 1 23 348 370 348 370 0.98 10 23 6.5e-05 0.0091 17.8 6.8 1 23 376 398 376 398 0.98 11 23 7.8e-05 0.011 17.6 0.5 2 23 405 426 404 426 0.96 12 23 5.6e-06 0.00079 21.2 1.6 1 23 432 454 432 454 0.97 13 23 0.044 6.2 8.9 0.2 5 23 464 483 461 483 0.92 14 23 0.00045 0.063 15.2 2.1 1 23 503 526 503 526 0.93 15 23 2.3e-05 0.0033 19.2 0.2 2 23 534 555 533 555 0.96 16 23 0.00014 0.019 16.8 3.5 1 23 561 583 561 583 0.96 17 23 3e-05 0.0042 18.9 0.1 1 23 589 612 589 612 0.97 18 23 2.7e-05 0.0038 19.0 1.0 1 23 620 642 620 642 0.98 19 23 0.046 6.5 8.9 1.3 1 23 648 671 648 671 0.97 20 23 1.8e-05 0.0025 19.6 0.3 1 23 677 699 677 699 0.96 21 23 3.9e-05 0.0055 18.5 8.2 1 23 705 727 705 727 0.98 22 23 0.00023 0.032 16.1 3.2 2 23 733 754 733 754 0.97 23 23 8.8e-06 0.0012 20.6 1.6 1 23 758 780 758 780 0.98
Sequence Information
- Coding Sequence
- ATGGATATAAATAAGTTTTTGGAAGTTGAAATAAAAAAAGAAATTGACGAAGAAAGCGAAAATGTATCTAGTCCAACAACAAAATACAGCGAAGAACAAAATTACGATCCAACAATTGAAAACCAAATGAGTGAGATGTACATAAAACAAGAAGTAGATGAGCAACAATATGGATTTAATGGACAGAATGAAAACGAACTTAAAACCCTCAACGCCGATATAATGTCATTTTTGTCTGTAACACTAGACGAAGATGAATCAAATAAAAGTATGGATACTGAAATTAAAACTGAAGATACAGATGAAATTTCAGATGACATTGATATAATGCAAACATCTTTAGTAGAAGACCCTTTTCTAAAACGATTTCCATGCACAATCTGCAAAAAAAGTTTTCGATTCCGCAGTACTTTACTTCATCATATGAGAAGACATCCAGTTAGAAAACAATATTATGAATGTAGAAGATGTAATAAATTTTTTGCAAAACCGTACAATTTTATTCAGCACATGAGTAGACATGATGGTGATAATGAGCCATTTTTCTGCCCGTACTGCGATGAAACATTCCCTCATTCAACAGGTTTAAAAGATCATCTTGAATCTCACACCCGAAAAGAGTATTCATGCAAGTATTGCAAGAAAGAATTTCTTCGTAAAGCCCATCTGGAGAGACATGAGTATAGTCACACGGGAGAAAAGCCGTTTATATGTAAAGAATGTAAAAAAAGTTTCACATGTAGTGAATATCTATTGGACCACATGAAGGTGCACTATAAGGTCAAACCATTTTGCTGCCCTACATGTAATAAAAAATTTACTAACTCTTCAATTTTGTCGGAACATTTACGACGACACACCGGTGAACGTCCTTTTCTGTGTAAAGACTGCGAAAAATCTTTCCACAGCAAATCAGATTTGAATAAACATGAAAGAATTCATAAAGAAGAGCGAAAAGTACCATGTCCTCATTGCACACGATTATTTTATAATGAAGCCCAGCTAGCTGTTCATAAAAAGACTCATTCCGAAGATAAGAAATTTATTTGCACAACATGCAATCGAAAATTTGATTTTTTATCTCAATTGTCGCGACATTCTCGTATGCACACCGGTGAACGTCCGTTTCACTGTAAAGTGTGTTCAAAAGATTTTATGAGCTCTTCTCATTTGTACCGACACATGCGATCTCATTCTTTTAAACCAAATCTTACTTGTGATGTATGTGACAGAACATTCAAACGAGTAGCATTTCTGGAGAAGCATCGTGAAATGCATGAAACTAGCAAAAAATTTAAATGTACAGATTGCGAGTATAGTTTCAAAACTAATAAAGAATTAGAGCGCCACAGTTTAATCCATAACAAAAATGTACCAGTACCTTGTATTAAATGTCAGAAGATATTCAATAGTGAGCTTAGTTTAAATGAACATATACAGAGTGTTCACGATGAAAAGTCTGTTGATATTACTGAATGTTTTACTCGTCAAGAAGGAAATAAACCTTTTTTATGTAAGATCTGTGAAAAATCATACCAGTCAAAATCAAAATTCGAACGACATTATCAGAATGTTCATATGGAAGCTATGAGATCGCTTCCATGTCCGATATGCTCAAAACTTTTCCGAAACGCAACTGAATTAAAAGCTCATGTAAAAAGACATGCAAATATCAAAACACATTGTTGTGAACTATGTGAACGAGCTTTTTCTTCGAAAGCTCAGTTAGTGCGGCATACCAGGTTACATTCAGGAGATCGACCGTTCCCATGTGAATCTTGCGATAAAGCTTTTGCTTTGGAAAGTGAGCTTACAAGACACGTAAGAGTTAGACACATGGGAGAAGAGAACAGAAATTTTCCTTGTGGTTTTTGCGAAAAGAGATTTTCAACTCGAGCTCAAGTAGAAAGACATACTAGATCTCATACTGGAGAAAGACCGTATGAATGTGAGTTTTGTGAAATGAAATTTAAAGGAATTTATGAAAAACAACGCCATGTTAAGAAACTCCACTTGAATGATCGGCCATTTGAATGTCAAGATTGCGAAAAAAAATTTATAAGTAATGCTGAACTAAACCGGCATTCAATTATTCATACTGGTGTTAGGCCTCATCAATGTACAGATTGCCATAAGACATTTTTTAATCAAAATGAACTTACCCGACATAAAAAAACTCATTCGGTATTCACAAATGTCTGTCATGTTTGTGCGAAAAGATTTAGTACAACCGAATTATTAAATCGACACACTAAAAGGCATACTAATAATCATGTTTGTGAAATTTGTAATAAAATTTGTGCATCTAAAATTAATCTAGCTAGGCATATGCTTACTCATGGTATGAATATTGATGGTTCTAGTACTTCGTATTAA
- Protein Sequence
- MDINKFLEVEIKKEIDEESENVSSPTTKYSEEQNYDPTIENQMSEMYIKQEVDEQQYGFNGQNENELKTLNADIMSFLSVTLDEDESNKSMDTEIKTEDTDEISDDIDIMQTSLVEDPFLKRFPCTICKKSFRFRSTLLHHMRRHPVRKQYYECRRCNKFFAKPYNFIQHMSRHDGDNEPFFCPYCDETFPHSTGLKDHLESHTRKEYSCKYCKKEFLRKAHLERHEYSHTGEKPFICKECKKSFTCSEYLLDHMKVHYKVKPFCCPTCNKKFTNSSILSEHLRRHTGERPFLCKDCEKSFHSKSDLNKHERIHKEERKVPCPHCTRLFYNEAQLAVHKKTHSEDKKFICTTCNRKFDFLSQLSRHSRMHTGERPFHCKVCSKDFMSSSHLYRHMRSHSFKPNLTCDVCDRTFKRVAFLEKHREMHETSKKFKCTDCEYSFKTNKELERHSLIHNKNVPVPCIKCQKIFNSELSLNEHIQSVHDEKSVDITECFTRQEGNKPFLCKICEKSYQSKSKFERHYQNVHMEAMRSLPCPICSKLFRNATELKAHVKRHANIKTHCCELCERAFSSKAQLVRHTRLHSGDRPFPCESCDKAFALESELTRHVRVRHMGEENRNFPCGFCEKRFSTRAQVERHTRSHTGERPYECEFCEMKFKGIYEKQRHVKKLHLNDRPFECQDCEKKFISNAELNRHSIIHTGVRPHQCTDCHKTFFNQNELTRHKKTHSVFTNVCHVCAKRFSTTELLNRHTKRHTNNHVCEICNKICASKINLARHMLTHGMNIDGSSTSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -