Aher008243.1
Basic Information
- Insect
- Agonopterix heracliana
- Gene Symbol
- -
- Assembly
- GCA_963693445.1
- Location
- OY856314.1:1238003-1247328[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.094 6.4 8.1 5.2 3 23 453 474 452 474 0.94 2 12 0.022 1.5 10.1 0.9 1 23 480 502 480 502 0.95 3 12 0.045 3.1 9.1 0.9 1 23 560 582 560 582 0.94 4 12 0.045 3.1 9.1 0.9 1 23 640 662 640 662 0.94 5 12 0.045 3.1 9.1 0.9 1 23 720 742 720 742 0.94 6 12 0.045 3.1 9.1 0.9 1 23 800 822 800 822 0.94 7 12 0.045 3.1 9.1 0.9 1 23 880 902 880 902 0.94 8 12 0.045 3.1 9.1 0.9 1 23 960 982 960 982 0.94 9 12 0.045 3.1 9.1 0.9 1 23 1040 1062 1040 1062 0.94 10 12 1.9e-05 0.0013 19.8 0.6 1 23 1068 1090 1068 1090 0.98 11 12 0.00055 0.037 15.2 0.6 1 23 1101 1123 1101 1123 0.98 12 12 4.6e-06 0.00032 21.7 1.7 1 22 1128 1149 1128 1152 0.92
Sequence Information
- Coding Sequence
- ATGAAAACATATACACGAAAACGACCGGAATATCAAATAATAGCAGATGCCGAGAATCTTTGCAGATTATGCTTGAAGAAGGCAAAGCAATCGATTCCAATCTTCACGGATGATTCAGGAAGTATGTTCAACGCCAAGGTGGCGCTGAGGATCATGATATGTGTGGGCTTGGAGATGTCAAATGAAGACTGCCTCCCAAACAATATCTGCATCGACTGCCACAATGAACTAGAGAGATATTATGCATTTAGGAAGAAATGTGAGGTTTCATATCAAAAACTAAAATCACATCTACTGGCGGTTAGAATAAAGGAAGTTAGCATTAGCAAAGACATTAAGGAAGATAGGACAAAGAAAAAAGATGTAGAACAAAGTGAAAAAGATAGTAAAGAAACttcaaatataacttttaaggTCAACTTTGATGGCTCTATAGTTGTTTGCAATGAGAAACCAAGTCGGATTGAAGAAAAACCACTAGTAACATTAACAAGGATGAAAGACAACAATCAACTTAAACTATTACGGAGCAACGAATTAACAGTTCAAAACCATAGAATACTGCCAAGACATACCTACCAGAACAACAAGTTGTCACAGAGTAGCTTATTACTTCCTATAAGCACTGCAACACCGGTTCCCAGAAGTGTTGTGATGGTTCCCACAAGTAATGTGATAGTTCCCGCAAGTAATGTGACAGTTCCCGCAAGTAATGTGACAGTTCCCACAAGTAATGTGATAGTTCCCGCAAGTAATGTGACAGTTTCCGCATGCAATATGACAGTTCCCGTAAGTAATGTGATAGTTCCCGCAAGTAACGTGACAGTTCCAGAGATAAATACCATGGTTCCAGAGATAAATACCATGGTTCCAGAGAGTATGGAACTAAAGAGCAAAGAACTACGGAGTAGTGAAGTTATTAAGAATAATGAAACAGTGGAAGATGTTGAAGTTgagGTCCAAAATGAGGTGAGAGACGCTGACCTGTCAACATTCCTGTCAAAACTCCTGATTGAGCTCGGAGTGTTGAGCCAGCAGGGAGACGAGCTGGTGCTGCTGGACCAGGAGATGAGGACCGTGGAGCTGGAGACCGATGACGGGCGGCGTGTCGCCTGGGAGTTGGTGGAGGAAGAGCCGGGAGTGGACTGTGTCGAAGAAAGTGTTCAAAACAATCAATTAGACTTACCTATGTCTGTGACTGTATCAGATGATGAAGGAAAGAAAAATTTTGTCGTAGAATATGCCACTTCAAATCTAGAAAAAGAAAACCCAGAAGAAGCACAGAAAAcCACTGCAGCAGCGTCGCCGTCGCCGGCGCCGGTGCAGGCGGACAGGCCGGTGGTCTCGGGCGCGTGCTGCCACGTGTGCGGGCGCAGGTTCGCGTCGCGCAGCGCCTGCGCGCGCCACGTGCGTGACCTGCACGCGCGCTGTCGCCCCCACGTGTGCCGCGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGGTACGTGCACGCCTGCAGGGTGTGCGGCCACGCCTTCTCGCAGCGCGTCGTCATGCTGCGGCACGAGCTCGTGCACCAAGCGGTGCGGCCGCACCAGTGCGCGCAGTGCCCGAAGAGCTTCACGCAGCGCGGCGCGCTGGCCGCACACTCGCGCTCGCACGCGCCGGCGCACGCGCGCGCGCTCGCGCTGTACCGCTGCGCGCTCTGCACCAAGGTCTTCCTCCACGCGTCCGGTCTGACCCGGCACATGGTGGTGCACTCCGGGCGCCGGTACCAGTGCGACGGCTGCAGCAGACAGTTCAAGGACAAGAGCTCCCTCAACAGACACATCAAGAACACCAACCACTCCTGCGACAAACCCGCCAAAGACGAAACCGCCTCCTAG
- Protein Sequence
- MKTYTRKRPEYQIIADAENLCRLCLKKAKQSIPIFTDDSGSMFNAKVALRIMICVGLEMSNEDCLPNNICIDCHNELERYYAFRKKCEVSYQKLKSHLLAVRIKEVSISKDIKEDRTKKKDVEQSEKDSKETSNITFKVNFDGSIVVCNEKPSRIEEKPLVTLTRMKDNNQLKLLRSNELTVQNHRILPRHTYQNNKLSQSSLLLPISTATPVPRSVVMVPTSNVIVPASNVTVPASNVTVPTSNVIVPASNVTVSACNMTVPVSNVIVPASNVTVPEINTMVPEINTMVPESMELKSKELRSSEVIKNNETVEDVEVEVQNEVRDADLSTFLSKLLIELGVLSQQGDELVLLDQEMRTVELETDDGRRVAWELVEEEPGVDCVEESVQNNQLDLPMSVTVSDDEGKKNFVVEYATSNLEKENPEEAQKTTAAASPSPAPVQADRPVVSGACCHVCGRRFASRSACARHVRDLHARCRPHVCRVCGHAFSQRVVMLRHELVHQGTCTPAGCAATPSRSASSCCGTSSCTKVRARLQGVRPRLLAARRHAAARARAPRYVHACRVCGHAFSQRVVMLRHELVHQGTCTPAGCAATPSRSASSCCGTSSCTKVRARLQGVRPRLLAARRHAAARARAPRYVHACRVCGHAFSQRVVMLRHELVHQGTCTPAGCAATPSRSASSCCGTSSCTKVRARLQGVRPRLLAARRHAAARARAPRYVHACRVCGHAFSQRVVMLRHELVHQGTCTPAGCAATPSRSASSCCGTSSCTKVRARLQGVRPRLLAARRHAAARARAPRYVHACRVCGHAFSQRVVMLRHELVHQGTCTPAGCAATPSRSASSCCGTSSCTKVRARLQGVRPRLLAARRHAAARARAPRYVHACRVCGHAFSQRVVMLRHELVHQGTCTPAGCAATPSRSASSCCGTSSCTKVRARLQGVRPRLLAARRHAAARARAPRYVHACRVCGHAFSQRVVMLRHELVHQGTCTPAGCAATPSRSASSCCGTSSCTKVRARLQGVRPRLLAARRHAAARARAPRYVHACRVCGHAFSQRVVMLRHELVHQAVRPHQCAQCPKSFTQRGALAAHSRSHAPAHARALALYRCALCTKVFLHASGLTRHMVVHSGRRYQCDGCSRQFKDKSSLNRHIKNTNHSCDKPAKDETAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -