Aher025848.1
Basic Information
- Insect
- Agonopterix heracliana
- Gene Symbol
- ZIPIC
- Assembly
- GCA_963693445.1
- Location
- OY856336.1:1057752-1071106[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0011 0.073 14.2 0.2 1 23 89 111 89 111 0.97 2 10 0.002 0.14 13.4 4.3 3 23 120 140 118 140 0.96 3 10 6.1 4.2e+02 2.4 5.3 1 23 144 166 144 166 0.94 4 10 0.069 4.7 8.5 5.7 1 23 171 194 171 194 0.98 5 10 0.034 2.4 9.5 0.1 1 20 226 245 226 247 0.93 6 10 0.00063 0.044 14.9 0.7 2 23 257 279 250 279 0.96 7 10 3.1e-06 0.00021 22.2 0.8 1 23 312 335 312 335 0.98 8 10 8.6e-06 0.00059 20.8 1.1 2 23 370 391 369 391 0.97 9 10 0.0075 0.51 11.6 0.1 1 23 397 420 397 420 0.96 10 10 6.7e-06 0.00046 21.2 0.2 1 23 426 449 426 449 0.96
Sequence Information
- Coding Sequence
- ATGTTAACGACAACTGAGAAGAAAAAGCCCGAAACGAAAAGCAAAACAAGGAAAAAAGTAACACCGAAGCGAAAACTAGAAGTTCCTAAGCCAGAAAAAATAGTACCGGAAAAGAAAAGAAAGCGACCGTTTAATATGAAATTCATAGAGGACTTCTCCGATTTTTGCGAAGAATTCAAATGTGTGGCCGTGTTCCAAACGAAAGAACAGCAGAAGAAAGAAGTAGAGGAGAGGAAAGACTCGTATATATTCAAGAAGTCTAGATTCAAATGTGACATTTGTTACATTGGGTTCATGAATATTAGTGCATATAACAAACACATGGCTTTACATGACGAGTCGAGCGGGGAACACTTGTGCGACGTGTGCCACACTAGGTACAGGACCAGGGACCAGTGGCTCAGTCACATCAGGCGACACAAGTATAGATTCGTCTGCAAGATCTGCGACCACGTCAGCAAGTGCAGCGAGAACGCAAAATTACACCACAAATGGCATGAGGGCGTCAAATATAAGTGTCAAGATTGCAACAAGGAATCCAAGACATACAGCACACATCTGAACCACAGGCGAACGTATCACACAAAGTCCATATGCGCAGTTTGTAAAGCGGAAGTTCCTGGCGGAACGAAGGGCTTGGACGAGCACAAGGAGAGTGCGCATTCCACTGAGaaattcCCGTGCGTGGTGTGCAGACAGAAGTTTGAGAGTCAGGAGGCGTTGGACAAACACTTTAATGCGGAGGGGGTCTGCGACCAACGGTTCACCCCGTGCACGAAATGTGGTGAGAAATTCCAGGACAAACCTCAGCTCTACGATCACAGAGAGACTGTGCACAGTGAGACATGGTACAGATGCGGTcagTGTCCGGTGGCACACACGTCGGGTCGCATGCTGGCATTGCACTGGAACGACCGACACCCTAAGGCCCCATTCGTATGCGAGGTCTGCGGACGGATCTTCAAGAACGTGTCTGGGCTGCATAACCACCAGCGCAAGGGGCATGCGGGCAACTCGCAAGCACAGTGTAAACCGATAAGAGAGAGAACCCAAGATCCCGCGGCCAAAGAGGGGCAGCTGGACAAACAACGGAAACCACGGAAGGTCCCGTGCCCCATGTGCCCCAAATCGTTCCAGTCGAAGTTTCATATGGAGATGCACATGAACACGCACACGGGCGAGCGCCCGTTCCAGTGTCCGCAGTGCGACTCCAAGTTCAGGGCGCCCGCAAACAGGGACGCACACATACTGAGGATGCACCTGAAGGAACGTCGCTTCAAGTGTGAATATTGTGAGAAAGCGTTCTTCACGCCGGCAGACCTCAGACTGCACGTCAGAGCTATTCACATGAAGCTACCGAGCCTGCGCAATaggaggaaaaaataa
- Protein Sequence
- MLTTTEKKKPETKSKTRKKVTPKRKLEVPKPEKIVPEKKRKRPFNMKFIEDFSDFCEEFKCVAVFQTKEQQKKEVEERKDSYIFKKSRFKCDICYIGFMNISAYNKHMALHDESSGEHLCDVCHTRYRTRDQWLSHIRRHKYRFVCKICDHVSKCSENAKLHHKWHEGVKYKCQDCNKESKTYSTHLNHRRTYHTKSICAVCKAEVPGGTKGLDEHKESAHSTEKFPCVVCRQKFESQEALDKHFNAEGVCDQRFTPCTKCGEKFQDKPQLYDHRETVHSETWYRCGQCPVAHTSGRMLALHWNDRHPKAPFVCEVCGRIFKNVSGLHNHQRKGHAGNSQAQCKPIRERTQDPAAKEGQLDKQRKPRKVPCPMCPKSFQSKFHMEMHMNTHTGERPFQCPQCDSKFRAPANRDAHILRMHLKERRFKCEYCEKAFFTPADLRLHVRAIHMKLPSLRNRRKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -