Aher012270.1
Basic Information
- Insect
- Agonopterix heracliana
- Gene Symbol
- -
- Assembly
- GCA_963693445.1
- Location
- OY856318.1:3261257-3278148[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0035 0.24 12.6 5.4 1 23 291 313 291 313 0.98 2 17 0.0064 0.44 11.8 1.8 2 23 321 343 320 343 0.95 3 17 0.46 32 5.9 0.6 2 23 348 369 347 369 0.96 4 17 4.3e-05 0.003 18.6 1.0 1 23 374 397 374 397 0.97 5 17 0.19 13 7.2 1.7 2 23 401 423 400 423 0.94 6 17 0.038 2.6 9.4 0.0 2 20 434 452 434 454 0.95 7 17 2e-05 0.0014 19.6 0.2 3 23 464 484 464 484 0.98 8 17 0.017 1.2 10.5 0.2 2 20 505 523 505 525 0.95 9 17 0.00053 0.036 15.2 0.1 3 23 535 555 535 555 0.99 10 17 0.015 1 10.6 1.0 1 15 615 629 615 632 0.89 11 17 0.055 3.8 8.8 0.4 1 15 651 665 651 668 0.89 12 17 0.0022 0.15 13.2 2.4 2 23 689 710 688 710 0.96 13 17 7.1e-05 0.0048 18.0 0.2 1 23 716 739 716 739 0.94 14 17 0.015 1.1 10.6 0.8 1 22 745 766 745 770 0.93 15 17 0.015 1.1 10.6 0.8 1 22 776 797 776 801 0.93 16 17 0.018 1.2 10.4 1.0 1 22 807 828 807 832 0.93 17 17 0.025 1.7 9.9 1.1 1 21 838 858 838 859 0.94
Sequence Information
- Coding Sequence
- ATGGACGACGAAGATATGAAATATTGTAAAGTATGTTTAGTGACCGATTGCGAAATGTATAGTTCGCCCTCAATAAGCGAAGCATATTCACAACTTGTTCAAGACCTGTGCTATTACAaactgtatgtttgttacgaGTGTAAACATCTACTGAACAAGTGGCAGGAGTTCAGATCCAAATGTATGACGGCTCTCAATGTATTATCATCTATTAATGTGGACCATTCAAAGataaCTGAAAGAAATATCAGAAATATTGATAGGAAACACTTCAAACTAGAATCAAAATTATCTTATTCCACGCTAATAAGCGCTACAATAAATAATAGCAACGAACAGATTGCAGAACCAGAACCCAGTTTAGACAATATTAAAACTGAAACGGATACTGAAGCTTTAGAAGATGACAAACTTGATATAAAATTGGAAACTGATGCCGGAGACCCTTTCTCCGACTCAGATGTTAAACAAGACATTGATACCGATCCTGATGCCTTCGAAGATCACAAACCTgataaaaaatttgatgatttgacCAATAGAGAGACTCGAGAAACATATCCGAATGAAATATATCTGTCAAATGATGCACCAAACGATATGATCCCAGAAGTAAAATCAAAACGAAAGTGTTTACCGAAATCAAAGAAAATTAAAGAAACTGTTccgaaagaaaagaaaattgtgAAATGTACGATAACAAAACGAAATCCAATTGAGATACCTTTGAGTAATAGAAGAAGTAGGAAACCTAGTAATTACACGATACTAATGATACAAAATTATACAACAATAGACATGATGACTCCATCGCAAGCTAAGAAAGAAATGCTTCGGAAAAAGGAATCAAAAAATTACAAGACTAATCCACACAAGTGTGATTCATGCTACAAAGGTTTTACCTTCGAAAGTACATATAATAATCACATGAAAAAGCATAGCCCGGATTTTGGAACTGTAGAGTGTGATTTCTGTCACCTCTTCTTTCGTAGTCGGGGTGAATTTACAATGCACATTGAAAGACGTCACAAGTATAAAATAACTTGTAAATTTTGTCCTTATATTTGCTTCAGCCCGTTTCAAGCCAAAGTTCATATTGATATTCATAAAGGAGAGAGTTACACATGTGAACAGTGTGAAATTACTTTCAGAAGTGCAAGTTCTCTATTAAATCACAAACGACTAAAGCATCCAGAGTGCGTGTGCGCACATTGCGGCAGCATGTTCGGCTCAACAGTGGGCCTCAAGATACACAAGTTGAGATCACATGAAAAGGATAGTACAGAGCTGCTGGGTCCCAAATGTGAGGAGTGTGATGTTCAGTTCGCGACAGAAACCGCGTGGAAGCGACATCTAGTGTTATCTTCCAAACATGCTGTAAGTAACGGGTGTGAAAAATGTGGTGAATCTTTCATTACTGCAGATGAACTGAAACGTCATGTGAAGGATCATCCTCACAGACTGGCTATTAAAGCAAGTTACAATCTAAAGAGCAAAAACCTGACCGGTCCCAAATGTGAGGAGTGTGATATTGAGTTCACGACAGAAAAGGAGCGGAAGCGACATCTGGTGCTCTCTTCTAAACATACTGTGAGTAACGGGTGTGAACAATGTGGTGCAACTTTCCCTACTGCAAAGAAACTGGAAATTCACGCGAGGAAGCACTCTCACTggttaaataataaagaaagatACGCCGCACAACGATTTAGAGCACCCGGCCCTTGTAAGACATGCGATGAATGGATGAAAACGCACAAAGAGTACAATGCACACAAGAAGTCGGAGCATCCCCGTCGTAAAGCCGGCGAGGGGGACAAGAGACTCGGGGATCTGACGCAGTACATCTGCGAACAGTGCGGGAAGTCCTTCAAGTACAATGCACACAAGAAGTCGAAGTATCCCCGTCGTAAAGCCGGCGAGGGGACAAGAGACGGGGGATCGACGCAGTACATCTGCGAACAGTGCGGGGAGTCCTTCAAGTACAATGCACACAAGAAGTTGGACCATCCCAGTCGTAAAGCCGGCGAGGGGGACAAGAGACAGGGGGATCAGACGCAGTGCATCTGCGAACAGTGCGGGGAGTCCTTCAagAACCTCCAAGTACTGCGATACCACAGAAACAAGCACGCGGGCGTACTCCCGTACGAGTGCGACGAGTGCGGCAAGAAGTACAGTCTACCCAGCAGCCTCTACAACCACAAGATGGCGGTACACGGCGGCGGCCGCAAGTTCAACTGCGACTTGTGCCAGAAGAGCTACCACACCAAGGAGAGAATCGCTAGACATATGCAGATGATTGCGGTACACGGCGGCGGCCGCAAGTTCAACTGCGACTTGTGCCAGAAGAGCTACCACACCAAGGAGAGAATCGCTAGACATATGCAGATGATTGCGGTACACGGCGGCGGCCGCAAGTTCAACTGCGACTTGTGCCAGAAGAGCTACCACACCAAGGAGAGAATCGCTAGACATATGCAGATGATGGCGGTGCACTCCGGCGGCCGCAAGTTCAACTGCGACTTGTGCCAGAAGAGCTACCACACCAAGGAGAGAATCGCTAGACACATGCAGATGGTGAGTACTGCAATACCACAGAAACAGGCGCACAATACGAATGCGGCAAGAAGTACAGTCCAGTAG
- Protein Sequence
- MDDEDMKYCKVCLVTDCEMYSSPSISEAYSQLVQDLCYYKLYVCYECKHLLNKWQEFRSKCMTALNVLSSINVDHSKITERNIRNIDRKHFKLESKLSYSTLISATINNSNEQIAEPEPSLDNIKTETDTEALEDDKLDIKLETDAGDPFSDSDVKQDIDTDPDAFEDHKPDKKFDDLTNRETRETYPNEIYLSNDAPNDMIPEVKSKRKCLPKSKKIKETVPKEKKIVKCTITKRNPIEIPLSNRRSRKPSNYTILMIQNYTTIDMMTPSQAKKEMLRKKESKNYKTNPHKCDSCYKGFTFESTYNNHMKKHSPDFGTVECDFCHLFFRSRGEFTMHIERRHKYKITCKFCPYICFSPFQAKVHIDIHKGESYTCEQCEITFRSASSLLNHKRLKHPECVCAHCGSMFGSTVGLKIHKLRSHEKDSTELLGPKCEECDVQFATETAWKRHLVLSSKHAVSNGCEKCGESFITADELKRHVKDHPHRLAIKASYNLKSKNLTGPKCEECDIEFTTEKERKRHLVLSSKHTVSNGCEQCGATFPTAKKLEIHARKHSHWLNNKERYAAQRFRAPGPCKTCDEWMKTHKEYNAHKKSEHPRRKAGEGDKRLGDLTQYICEQCGKSFKYNAHKKSKYPRRKAGEGTRDGGSTQYICEQCGESFKYNAHKKLDHPSRKAGEGDKRQGDQTQCICEQCGESFKNLQVLRYHRNKHAGVLPYECDECGKKYSLPSSLYNHKMAVHGGGRKFNCDLCQKSYHTKERIARHMQMIAVHGGGRKFNCDLCQKSYHTKERIARHMQMIAVHGGGRKFNCDLCQKSYHTKERIARHMQMMAVHSGGRKFNCDLCQKSYHTKERIARHMQMVSTAIPQKQAHNTNAARSTVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -