Aher012291.1
Basic Information
- Insect
- Agonopterix heracliana
- Gene Symbol
- -
- Assembly
- GCA_963693445.1
- Location
- OY856318.1:3522652-3528835[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.4e-06 0.00016 22.6 0.9 1 23 24 47 24 47 0.98 2 14 0.00057 0.039 15.1 0.3 1 22 54 75 54 79 0.94 3 14 0.0034 0.23 12.7 0.3 1 22 109 130 109 134 0.94 4 14 0.0034 0.23 12.7 0.3 1 22 164 185 164 189 0.94 5 14 0.00076 0.052 14.7 0.3 1 22 219 240 219 244 0.94 6 14 0.0034 0.23 12.7 0.3 1 22 274 295 274 299 0.94 7 14 0.0034 0.23 12.7 0.3 1 22 329 350 329 354 0.94 8 14 0.0034 0.23 12.7 0.3 1 22 424 445 424 449 0.94 9 14 0.0034 0.23 12.7 0.3 1 22 479 500 479 504 0.94 10 14 0.0034 0.23 12.7 0.3 1 22 534 555 534 559 0.94 11 14 0.0034 0.23 12.7 0.3 1 22 589 610 589 614 0.94 12 14 0.0034 0.23 12.7 0.3 1 22 644 665 644 669 0.94 13 14 0.00013 0.0091 17.1 0.6 1 23 699 721 699 721 0.99 14 14 4.1 2.8e+02 3.0 8.8 1 23 727 750 727 750 0.95
Sequence Information
- Coding Sequence
- ATGAACACCTTTGTGTTGCTAAAAACGTCCCTCCAAAACCACCGCAACAAGCACACGGGCGACCGCCCGTACGAGTGCCTCGAGTGTGGCAAGACTTACACCCAGCGCTCCTCCCTCTACATACACGAGCGTACCCAGCACACAGCTACCAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCGCCAAGGGCGCTCTCGCTAAACATATCAAGGTACAGTCGCTCCACATACAACCAGCCGCGTGTTCCAGTGCGACACCTGCAATAAACAGTACTCCGCCAAGGGCGCTCTCGCTAAACATATCAAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCGCCATGGGCTCCCTCGCTAAACATATCAAGGTACAGTCGCTCCACATACAACCAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCGCCATGGGCTCCCTCGCTAAACATATCAAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCGCCATGGGCTCCCTCGCTAAACATATCAAGGTACAGTCGCTCCACATACAACCAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCGCCATGGGCTCCCTCGCTAAACATATCAAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTTCTCCGCCATGGGCTCCCTCGCTAAACATATCAAGGTACAGTCGCTCCACATACAACCAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCGCCATGGGCTCCCTCGCTAAACATATCAAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCGCCATGGGCTCCCTCGCTAAACATATCAAGGTACAGTCGCTCCACATACAACCAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCGCCATGGGCTCCCTCGCTAAACATATCAAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCGCCATGGGCTCCCTCGCTAAACATATCAAGGTACAGTCGCTCCACATACAACCAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCGCCATGGGCTCCCTCGCTAAACATATCAAGGTACAGTCGCTCCACATACAACCAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTTCTCCGCCATGGGCTCCCTCGCTACACATATCAAGGTACAGTCGCTCCACATACAACCAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCGCCATGGGCTCCCTCGCTAAACATATCAAGGTACAGTCGCTCCACATACAACCAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCGCCATGGGCTCCCTCGCTAAACATATCAAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCGCCATGGGCTCCCTCGCTAAACATATCAAGGTACAGTCGCTCCACATACAACCAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCACCAAGGGCGCCCTGGCTAAACATATCAAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCGCCATGGGCTCCCTCGCTAAACATATCAAGGTACAGTCGCTCCACATACAACCAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCGCCATGGGCTCCCTCGCTAAACATATCAAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCGCCATGGGCTCCCTCGCTAAACATATCAAGGTACAGTCGCTCCACATACAACCAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCACCAAGGGCGCCCTGGCTAAACATATCAAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCGCCATGGGCTCCCTCGCTAAACATATCAAGGTACAGTCGCTCCACATACAACCAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCGCCATGGGCTCCCTCGCTAAACATATCAAGCCGCGTGTTCCAGTGCGACACCTGCAACAAACAGTACTCCGCCATGGGCTCCCTCGCTAAACATATCAAGACTCACTTCGGTATTCGTCCGTACAAGTGCCAGTTTTGTGATAATTCATACCATCACAAGTGCGAGATGAAGTACCATATGGACTACGTACACTTCAAGAAACCGTGGCCGAAACGAGACAGAACTAAAAGAAGAAACATCTAA
- Protein Sequence
- MNTFVLLKTSLQNHRNKHTGDRPYECLECGKTYTQRSSLYIHERTQHTATSRVFQCDTCNKQYSAKGALAKHIKVQSLHIQPAACSSATPAINSTPPRALSLNISSRVFQCDTCNKQYSAMGSLAKHIKVQSLHIQPAACSSATPATNSTPPWAPSLNISSRVFQCDTCNKQYSAMGSLAKHIKVQSLHIQPAACSSATPATNSTPPWAPSLNISSRVFQCDTCNKQFSAMGSLAKHIKVQSLHIQPAACSSATPATNSTPPWAPSLNISSRVFQCDTCNKQYSAMGSLAKHIKVQSLHIQPAACSSATPATNSTPPWAPSLNISSRVFQCDTCNKQYSAMGSLAKHIKVQSLHIQPAACSSATPATNSTPPWAPSLNISRYSRSTYNQPRVPVRHLQQTVLRHGLPRYTYQGTVAPHTTSRVFQCDTCNKQYSAMGSLAKHIKVQSLHIQPAACSSATPATNSTPPWAPSLNISSRVFQCDTCNKQYSAMGSLAKHIKVQSLHIQPAACSSATPATNSTPPRAPWLNISSRVFQCDTCNKQYSAMGSLAKHIKVQSLHIQPAACSSATPATNSTPPWAPSLNISSRVFQCDTCNKQYSAMGSLAKHIKVQSLHIQPAACSSATPATNSTPPRAPWLNISSRVFQCDTCNKQYSAMGSLAKHIKVQSLHIQPAACSSATPATNSTPPWAPSLNISSRVFQCDTCNKQYSAMGSLAKHIKTHFGIRPYKCQFCDNSYHHKCEMKYHMDYVHFKKPWPKRDRTKRRNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00027966;
- 90% Identity
- iTF_00027966;
- 80% Identity
- iTF_00027966;