Aher024230.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agonopterix heracliana
Gene Symbol
-
Assembly
GCA_963693445.1
Location
OY856333.1:3520573-3524990[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00056 0.039 15.1 0.3 1 23 5 28 5 28 0.90
2 16 0.045 3.1 9.1 0.4 1 23 127 150 127 150 0.88
3 16 0.0031 0.21 12.8 0.9 3 23 180 200 180 200 0.99
4 16 0.0043 0.3 12.3 1.7 1 23 222 244 222 244 0.99
5 16 0.0014 0.098 13.8 0.2 1 23 248 270 248 270 0.95
6 16 0.00043 0.029 15.5 0.2 1 23 275 298 275 298 0.96
7 16 0.0042 0.29 12.4 5.4 1 23 304 327 304 327 0.96
8 16 0.059 4.1 8.7 0.4 1 11 334 344 334 348 0.88
9 16 0.23 16 6.9 1.9 1 23 470 493 470 493 0.95
10 16 0.035 2.4 9.5 0.1 1 23 564 586 564 586 0.96
11 16 0.00038 0.026 15.7 0.2 1 23 590 612 590 612 0.98
12 16 0.0018 0.12 13.5 1.3 1 23 617 640 617 640 0.94
13 16 0.014 0.96 10.7 0.3 2 23 647 669 647 669 0.92
14 16 0.031 2.1 9.7 6.3 1 23 676 699 676 699 0.96
15 16 5.8e-05 0.004 18.2 4.9 2 23 706 727 705 727 0.96
16 16 3.5e-05 0.0024 18.9 0.6 1 23 733 755 733 755 0.99

Sequence Information

Coding Sequence
ATGAAGAATTTATACTTATGTTTCTATTGCGATCAGCAGTTCTCTAACCCAGCTGAACTGAGACAGCACAATTCCATTGAACATTCCAATCAAACTTCTAAAGAAATAACAAACGCTTTATCGAAATTACACAAATACGAATTGGTAAAAGTAGACGTAACTGATGTCGGATGCAAGATCTGTAATGAATCGATAAACACTTTAGGTCAGGATGAGCCATCAACCCAGAGTTATACTGAAGATCACGGACCAGAAACTAAGTCGAAAAGGAAACACGCACCTGTAAGGGATATAGACGACAGAAAAACTAGAATAAAACACGCCACAATACTTCTAGAAAACTCGAAAATATGTCCCTTTAGATGGATGAAGAATCTATACTTGTGTTTCTATTGCGATCTGCAGTTCTTTGATCCGGCTGATCTTAGATATCACAATTATATTGAACATTCTAAAAAGTCTAGTGTAGAAGTTAAATTTTCTTTGtcgaaattaaaaaagtttgaaTTAGTTAAAGTGGACATTACGGACGTCGGTTGCAAAATCTGTGACGAAACCATTACAAGTTTCGAGTCTTTGAAAACCCATCTACAAAAGCACGATAAATATATAAACCCCGAATCATGTGACGGAGTGTTGCCTTTTAAAGTCGCAAAGAACGACTACAAATGCGCATTATGCGAAGAAAAATACGATGAATTCAAGTCTTTGAATCATCACATGAACGTGCACTTTCAGAACTTCATTTGCGAACAATGTGGTACCGGATTTATAACCCCAGAACGTTTAAGGACCCACGCTTTTTCTCATGAAACGGGTTCCTTCCCTTGTGAGGATTGCGACAAGATATTCCGTTCTTCAAACGCTAAGAACGAGCATTACGCGACCGTTCATAGGAAAGTTAAAAGGCATCGTTGTCCACACTGCTCAGAAACTTTCCGGAACTACTTTCAACGGAACAAACACATTTCATCCGTTCATAATTTGAAACTAAAAGAATTTAAATGCACTATGTGTCCAAAAGTCTTCACACTCAGTGgaTCGGACTCGCCAATAATACCGGAAATACAGCCGCAGAGAAAAAGGATCGTCCCGTTATTCCAAGTGGCTTATGATCGCAGCTTATGTAGACCTCTTGGCACTGTAGTGGACTTCAGCAAACTACGCTCGAAGTCTTTCGCCAGAAAAACTACTCCAAGAGATTTTACTCCATCTCGTAGCGCCTCGCCCATGTCGCTCGCCAGATCTCCGTCACCGCCTCCCATCTTAGATGATTTGAATTTAAATCCACCTATAGAAGTTCAGCCTAAAGAGACAGCATTAAAAAAACTCCCTGACGTCCGACGAAATGCTTTGACGGTATTCGAATTTTCCACAGCATACCCCTTCGTTTACGGAAATAATAAATTCAAATGTTTCGTGTGCTCACAGCCGTTTTTAGAAACTTCTCTTTTGAGAAATCACATGCACGAGTCACATACGTTTGCATCTTTGAAACGGTTAGTCAATAATCGTAGAGAAAACGTTTTGAAAGTAGATGTGAGTGAACTAATTTGTAAATTATGCTCTGTGAGGCCCAAGGATTTGTTagaactaaaatttcatttgaaaGAGGAACATGGTAAACCTATAGACCCAGATTTGCAAGATAACATGATACCGTTCAAAATAGACGGTGGAGAGGGTTCGTACCAGTGCGTTATGTGCGACGAAAGCTTTATCAAAGTACGTATCCTCGTCATTCACATGAGCGTTCACTTCAATAACTACAGCTGCGAAATTTGCGGATCAGGATTCATGACATTAAGACTTTTGAAGAAACATCTAGAAGTTCACGAAAACGGAAATTTCCCTTGCGACAAATGCAACAAAATTTTCAGTACGCCTCACAAGAGGTCGCTTCATGTAAGAGGGGTTCATTTGAAACAGTATCCCCGTCGCTGCCCAATCTGCCCGGAAAGATTTAATTCGAATTACAGAAGGACGATACATCTTCAGGATGTCCATAACCAGTCGACTAGGGTGCATAAGTGTGAGACATGTGGACGGGCTTTCAATCTCAAATACCATCTCATTTGTCATACTCGATCGGTACATTTGCAGGAAAGGAATCAGCAGTGCGATATATGTCATCAAAGGTTCTGTAATAAAGAAACTCTGAAGAGGCATATGGTTATACATACGGGAGAAAAGAATTACAAGTGCGAAGTTTGCGGCATGGCGTTCTTGAGGAGAAAGAATTTGAAGGATCATTTGCGACTGCACGAAATAGTTTAG
Protein Sequence
MKNLYLCFYCDQQFSNPAELRQHNSIEHSNQTSKEITNALSKLHKYELVKVDVTDVGCKICNESINTLGQDEPSTQSYTEDHGPETKSKRKHAPVRDIDDRKTRIKHATILLENSKICPFRWMKNLYLCFYCDLQFFDPADLRYHNYIEHSKKSSVEVKFSLSKLKKFELVKVDITDVGCKICDETITSFESLKTHLQKHDKYINPESCDGVLPFKVAKNDYKCALCEEKYDEFKSLNHHMNVHFQNFICEQCGTGFITPERLRTHAFSHETGSFPCEDCDKIFRSSNAKNEHYATVHRKVKRHRCPHCSETFRNYFQRNKHISSVHNLKLKEFKCTMCPKVFTLSGSDSPIIPEIQPQRKRIVPLFQVAYDRSLCRPLGTVVDFSKLRSKSFARKTTPRDFTPSRSASPMSLARSPSPPPILDDLNLNPPIEVQPKETALKKLPDVRRNALTVFEFSTAYPFVYGNNKFKCFVCSQPFLETSLLRNHMHESHTFASLKRLVNNRRENVLKVDVSELICKLCSVRPKDLLELKFHLKEEHGKPIDPDLQDNMIPFKIDGGEGSYQCVMCDESFIKVRILVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHENGNFPCDKCNKIFSTPHKRSLHVRGVHLKQYPRRCPICPERFNSNYRRTIHLQDVHNQSTRVHKCETCGRAFNLKYHLICHTRSVHLQERNQQCDICHQRFCNKETLKRHMVIHTGEKNYKCEVCGMAFLRRKNLKDHLRLHEIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-