Aher024325.1
Basic Information
- Insect
- Agonopterix heracliana
- Gene Symbol
- -
- Assembly
- GCA_963693445.1
- Location
- OY856333.1:4911738-4913396[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.28 19 6.6 0.0 3 23 28 49 26 49 0.89 2 15 0.00033 0.023 15.8 0.8 1 23 69 92 69 92 0.97 3 15 0.00012 0.0086 17.2 0.5 1 23 97 120 97 120 0.96 4 15 0.0015 0.1 13.8 0.3 1 23 125 148 125 148 0.96 5 15 0.043 3 9.2 3.2 2 20 151 169 151 173 0.94 6 15 0.92 63 5.0 4.4 2 21 180 199 179 200 0.93 7 15 0.054 3.7 8.9 1.1 1 23 258 281 258 281 0.95 8 15 8.8 6e+02 1.9 0.5 2 23 309 331 308 331 0.89 9 15 0.0021 0.14 13.3 0.1 2 23 354 376 353 376 0.95 10 15 0.00018 0.012 16.7 0.1 3 23 383 404 382 404 0.94 11 15 0.04 2.8 9.3 2.5 2 23 409 431 408 431 0.94 12 15 0.00025 0.017 16.2 2.7 1 23 436 459 436 459 0.97 13 15 5.3e-06 0.00036 21.5 4.9 1 23 463 486 463 486 0.98 14 15 0.00012 0.008 17.3 0.4 2 23 493 514 492 514 0.96 15 15 1.1e-06 7.7e-05 23.6 0.6 1 23 520 542 520 542 0.98
Sequence Information
- Coding Sequence
- ATGTGTTCAACCACAGATTATTCTCTCAAAATCATCAAAGGAAATCACATTGAGATTAAAATAGATGTCTCAGAGATAGCTTGTGATATTTGCAATGAACCTTTTGAGAATATAGGCGAGATTATAGAACATCTAATAGGAAAACATCAACTGGAATATGATAAGACCATTGATATACCATTACAGGAATACAGACTTGCAGATTTCCGATGCTTATACTGCGACCAACAGTTTACCTACTTCGGTAATTTAGTAAGCCATGTCAACATAAATCACCCGCAAAACTGCTTTATCTGTGACGATTGTGGCGCCACGTTCAACAAGAAGAGAGATCTAGCCATGCATTTTAGGAACAACCACAAACGCGGTGGATATCCGTGCGACATATGTTCCGATGCCTTCGAAACTCGTAGAATGTTAATACGCCATCAAAATAACTATCACTTTAGAAAATGCAAAAGTTGCAATTCATCGTTTGCATCTTACAGTTTACTACAGAAACATGTGCAATGTGATCATCCGGACGACGGGTGTTTGATGTGCTCTTTCTGTTCCAAGCAATGCCATTCGAAACAAGGATTGAAACAGCACCTCAATAAGTGCAGAGTCAAAATGGTCGCTCAAGACGACCTACCCGTAGATGACAATACATTAATTACATTCACCGATAGCTTGGAGcctaaaaagaaacaaaatgtcGCCCAAATAAGAGAAAATATAGCTTGTGTCCTAAACATGTCTACGGCTATACCTTTCAAGTTCTTCGCCATTTTCTCCTGCTTCTATTGCTCAAAAAAGTTCTTGGACTTTGACGAATTGAAAGGACATACTTTGATCGAACACCCGATATGTGATGTAAAATCTAAATGCGTTAAGAGATATAAAGGGGAACGGACTTGCGTTAAAATAGACATTTCAATATTAAGCTGCAAGTTATGCTGCCAACCTATGTCGGATTTGGACACCCTAATTGATCATCTTATAACAAATCATAATGCAAATTACGACAAATCTATAACAAATTGCCTAGACCCTTTTAGGATTATCAAAGACAACATACCCTGCCCGATATGCTCTCAAGTATTCcgatattttagtattttactAAGGCACATAAATTCTGATCACAGTGACAATAATAATATATGCGATTTCTGCGGTCGGGGCTTCAAAAATGTCGCGAATCTCAACGTCCACATATCATATTCACACTCGGGGTCGAAGGAATGTGAGATATGTTTAGCTAAATTCAAGAACCAATGGTGCCTGTCCCGTCACAAAGCCAAAACACACGACGCGAAAGACTTCAAATGTCCAAAATGCCCAGAAATGTTCCAGTCACAGTACCACAAACAAAAACACTTGATCAGAGTCCACGATATTGGCCATAAGTGCAATTATTGCGGTAGAATGTTCACGAGAAATTCGTTTATGAAAGATCATATAAGGCGGACACATTTGAAAGAGAAAAATGTACCTTGTTCCGTTTGCAATGAGAAGTTTTTTGATAATTATCAGTTGAGGCTACACATGGTAAAGCATGAGGGTGATAGGAAATTTACTTGTTCGGTTTGTGGTAAGGCTTTTTTGAGGAGAAGCAATTTGCAGTCGCATATGGAGATGCATAAGAAGTATGGCCATGTGCAAGCTCCTGCGTAG
- Protein Sequence
- MCSTTDYSLKIIKGNHIEIKIDVSEIACDICNEPFENIGEIIEHLIGKHQLEYDKTIDIPLQEYRLADFRCLYCDQQFTYFGNLVSHVNINHPQNCFICDDCGATFNKKRDLAMHFRNNHKRGGYPCDICSDAFETRRMLIRHQNNYHFRKCKSCNSSFASYSLLQKHVQCDHPDDGCLMCSFCSKQCHSKQGLKQHLNKCRVKMVAQDDLPVDDNTLITFTDSLEPKKKQNVAQIRENIACVLNMSTAIPFKFFAIFSCFYCSKKFLDFDELKGHTLIEHPICDVKSKCVKRYKGERTCVKIDISILSCKLCCQPMSDLDTLIDHLITNHNANYDKSITNCLDPFRIIKDNIPCPICSQVFRYFSILLRHINSDHSDNNNICDFCGRGFKNVANLNVHISYSHSGSKECEICLAKFKNQWCLSRHKAKTHDAKDFKCPKCPEMFQSQYHKQKHLIRVHDIGHKCNYCGRMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYQLRLHMVKHEGDRKFTCSVCGKAFLRRSNLQSHMEMHKKYGHVQAPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -