Aher012293.2
Basic Information
- Insect
- Agonopterix heracliana
- Gene Symbol
- ZIPIC
- Assembly
- GCA_963693445.1
- Location
- OY856318.1:3557984-3569919[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.4 1.6e+02 3.7 6.0 1 23 320 342 320 342 0.98 2 19 0.2 14 7.1 1.6 1 23 376 398 376 398 0.95 3 19 0.00016 0.011 16.8 1.0 1 23 403 426 403 426 0.96 4 19 0.78 54 5.2 0.1 2 23 431 453 430 453 0.92 5 19 0.039 2.6 9.3 0.0 2 20 464 482 464 484 0.95 6 19 0.008 0.55 11.5 0.0 3 23 494 514 494 514 0.96 7 19 0.09 6.2 8.2 0.7 3 23 534 555 533 555 0.97 8 19 0.29 20 6.6 2.3 2 23 569 590 568 590 0.96 9 19 0.00024 0.017 16.3 0.8 1 23 596 618 596 618 0.98 10 19 0.0013 0.092 13.9 0.1 1 21 626 646 626 646 0.97 11 19 0.0042 0.29 12.4 0.1 2 21 646 665 645 670 0.94 12 19 0.00098 0.067 14.4 0.2 1 21 682 702 682 707 0.95 13 19 0.00098 0.067 14.4 0.2 1 21 719 739 719 744 0.95 14 19 0.00098 0.067 14.4 0.2 1 21 756 776 756 781 0.95 15 19 0.00098 0.067 14.4 0.2 1 21 793 813 793 818 0.95 16 19 0.00098 0.067 14.4 0.2 1 21 830 850 830 855 0.95 17 19 0.00098 0.067 14.4 0.2 1 21 867 887 867 892 0.95 18 19 0.00052 0.036 15.2 0.5 1 23 904 926 904 926 0.98 19 19 0.0013 0.092 13.9 4.2 1 23 932 955 932 955 0.95
Sequence Information
- Coding Sequence
- ATGCAGAACATAATCCTTCGCATAATATCCAATGTACCCTGGCTCATAACAAATGGGGAAATTCACGAGCAATTGAAAATGAATACCATAAAGGAGGAAGTACGCTCCCTGGCAGTGAACTACCAACAGCGTCTTGCAAACCATCTGAATGAGCTGGCTGTCAAACTAAGCCAGCAACCGCCAGCGCTACCCACAACGCCTAAAACGGCACAAAATTCAGGAGTTACACGACCGCAAGTAGTTTGTGCAGATTCACAAACATTTATATGCTACCAGTGCACCAGCCAACTGCAAAAGCATCATGAATTTCGTTTGAAGTGCATGACATCACTCAATGTTTTAACTTCTCTTGATGTGGACCACACCAAGATATCTAAAAAACTCATTCAGAACATTGACagaaactttttcaatttggATTCTAAATTATCATTTTGTTCCATTTTAGTGTGTAGTAGTAATGACCAATATTTGGTGCCGAAAgattgttttaataataaagtgaattacaataaaaatgaaGTTGGTacagaaattgaaattgaaatagatgAAATCAAAACTGAAACTTGTGAATATAATAATGACACATTTGATCATGTTGTTCTAAGTGATTCAAATGATAAAAGTCAACATGTTGCTATGGATGTACCAAAAGAAAGTTTTCAGTTAAATGATAATACAACAAAAAACTATGTCCCTGAAATTAAAttggaacaaaaaagtttatcACAAGCTAAGAAAAATAACCGGAAATCTgttaaaaatgtaaacaaatcgACTACAAACGTTGAACCTACAAAAAGCCCAACAAAATCAAAGCTCAGAGAAATTGAATGGGCAGACAATacagaaaattattttaaagagtATGGTGATATACAGCATATGACCGAAGAGGATGCTAAAAATGATATGCTCTCGAGAAAAGAGTCagataattataagtttaatccACACAAATGTGACCTTTGCTACAAAGGCTTCACTTGCGAAGTTACATTTGATAATCATATGAAGAAACATAGCCCGGAATTTGGAAGTTATGAATGTGAATTCTGTCACATAAGGTTTTCCACGAAGAGACGCAGTTATTGTCACAAGTTGCAAAGTCACATGCGCAAATATGTCTGTAAGCAGTGCCCCTACGTATGCAATAGCAGAACTCAAGCTTATTTACACGTGGATCGTCATAAAGGCAAGAGGTTTGAGTGCAACGAATGTGGAGAAAGCTTCAGAATGCCGAACACTCTGTCGACGCACAAAAGTAAGAAACATTCGAAGGAGATGGTGTGCGAACTGTGCGGGAACACGTTCGGCTCTATGAAGGGCATCAATGCGCACAAGAACTTAGTGCATAGACAGGATAGTAAAGAACTGCTGGGTCCCAAATGTGAGGAGTGTGATGTTCAGTTCGCGACAGAAACTGCGTGGAAGCGACATCTGGTGATCTCATCTAAACATATTGTTATTAACGGGTGTGAAGAGTGTGGTGAGATATTCCCGAGCGCGGAGGCCCTGAAGTACCACTCGACGGTGCACCCGAAGAGGAAGGGAGATATTGGTCGGTACATCTTCAGGTTCGTGCCGCCCGCTGCTTGCAAGATCTGCAACAAATGGCTGCAAACACGTACAGAGTACAAGGAGCACATGAAGACTGCGCACCCTCGACCGAACAAGAAGGGGCCCGTGGCCTCGCCGCTGGTCTGCGAGGTGTGCGGCGATAAGTTCAAGAGTCTGTGTTTCTTCCGAGCGCACAAGCTGAAGCACACCGGCGAGCGTCCGTACGAGTGCGGCGCGTGCGGCAAGAGGTTCCGACACCAGCAGGCGCTGTCCCTCCACGAGAAGATACACTCGCGCACCGGCGCCGACGCGTTCCAGTGCGACATGTGCCAGAAGCTGTACGATACCAAGGCGGGCCTCGAGAGACATATCAAGTGCGACATGTGCCAGAAGCTGTACGATACCAAGGCGGGCCTCGAGAGACATATCAAGGCGCTGTCCCTCCACGAGAAGATACACTCGCGCACCGGCGCCGACGCGTTCCAGTGCGACATGTGCCAGAAGCTGTACGATACCAAGGCGGGCCTCGAGAGACATATCAAGGCGCTGTCCCTCCACGAGAAGATACACTCGCGCACCGGCGCCGACGCGTTCCAGTGCGACATGTGCCAGAAGCTGTACGATACCAAGGCGGGCCTCGAGAGACATATCAAGGCGCTGTCCCTCCACGAGAAGATACACTCGCGCACCGGCGCCGACGCGTTCCAGTGCGACATGTGCCAGAAGCTGTACGATACCAAGGCGGGCCTCGAGAGACATATCAAGGCGCTGTCCCTCCACGAGAAGATACACTCGCGCACCGGCGCCGACGCGTTCCAGTGCGACATGTGCCAGAAGCTGTACGATACCAAGGCGGGCCTCGAGAGACATATCAAGGCGCTGTCCCTCCACGAGAAGATACACTCGCGCACCGGCGCCGACGCGTTCCAGTGCGACATGTGCCAGAAGCTGTACGATACCAAGGCGGGCCTCGAGAGACATATCAAGGCGCTGTCCCTCCACGAGAAGATACACTCGCGCACCGGCGCCGACGCGTTCCAGTGCGACATGTGCCAGAAGCTGTACGATACCAAGGCGGGCCTCGAGAGACATATCAAGGCGCTGTCCCTCCACGAGAAGATACACTCGCGCACCGGCGCCGACGCGTTCCAGTGCGACATGTGCCAGAAGCTGTACGATACCAAGGCGGGCTTCGAGAGACATATCAAGGGTCACCTCGGCATTCGTCCATTTGAATGTTCATATTGTCACAAATTTTTCACCTTCAAGTATGAAGTGACAATGCACATAAACTTCGTACACCTAAAGAAGCCGTGGCCGAAACGAATCAGAACCAAACGGAAGGCGAAAGAAGAAAATTAA
- Protein Sequence
- MQNIILRIISNVPWLITNGEIHEQLKMNTIKEEVRSLAVNYQQRLANHLNELAVKLSQQPPALPTTPKTAQNSGVTRPQVVCADSQTFICYQCTSQLQKHHEFRLKCMTSLNVLTSLDVDHTKISKKLIQNIDRNFFNLDSKLSFCSILVCSSNDQYLVPKDCFNNKVNYNKNEVGTEIEIEIDEIKTETCEYNNDTFDHVVLSDSNDKSQHVAMDVPKESFQLNDNTTKNYVPEIKLEQKSLSQAKKNNRKSVKNVNKSTTNVEPTKSPTKSKLREIEWADNTENYFKEYGDIQHMTEEDAKNDMLSRKESDNYKFNPHKCDLCYKGFTCEVTFDNHMKKHSPEFGSYECEFCHIRFSTKRRSYCHKLQSHMRKYVCKQCPYVCNSRTQAYLHVDRHKGKRFECNECGESFRMPNTLSTHKSKKHSKEMVCELCGNTFGSMKGINAHKNLVHRQDSKELLGPKCEECDVQFATETAWKRHLVISSKHIVINGCEECGEIFPSAEALKYHSTVHPKRKGDIGRYIFRFVPPAACKICNKWLQTRTEYKEHMKTAHPRPNKKGPVASPLVCEVCGDKFKSLCFFRAHKLKHTGERPYECGACGKRFRHQQALSLHEKIHSRTGADAFQCDMCQKLYDTKAGLERHIKCDMCQKLYDTKAGLERHIKALSLHEKIHSRTGADAFQCDMCQKLYDTKAGLERHIKALSLHEKIHSRTGADAFQCDMCQKLYDTKAGLERHIKALSLHEKIHSRTGADAFQCDMCQKLYDTKAGLERHIKALSLHEKIHSRTGADAFQCDMCQKLYDTKAGLERHIKALSLHEKIHSRTGADAFQCDMCQKLYDTKAGLERHIKALSLHEKIHSRTGADAFQCDMCQKLYDTKAGLERHIKALSLHEKIHSRTGADAFQCDMCQKLYDTKAGFERHIKGHLGIRPFECSYCHKFFTFKYEVTMHINFVHLKKPWPKRIRTKRKAKEEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -