Aher024231.1
Basic Information
- Insect
- Agonopterix heracliana
- Gene Symbol
- -
- Assembly
- GCA_963693445.1
- Location
- OY856333.1:3531441-3536665[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 1.4 95 4.4 0.1 2 23 36 58 35 58 0.94 2 24 0.00094 0.064 14.4 0.4 2 23 82 103 81 103 0.96 3 24 0.4 28 6.1 0.7 1 21 107 127 107 128 0.94 4 24 0.27 18 6.7 0.3 1 23 169 192 169 192 0.96 5 24 0.29 20 6.6 0.1 2 23 218 240 217 240 0.95 6 24 0.011 0.76 11.0 0.2 2 23 264 285 263 285 0.94 7 24 6.1e-05 0.0042 18.1 0.0 1 23 289 312 289 312 0.97 8 24 0.01 0.69 11.2 0.4 1 23 316 339 316 339 0.98 9 24 0.95 65 5.0 0.9 1 23 344 369 344 369 0.90 10 24 0.17 12 7.3 5.6 1 22 378 399 378 401 0.87 11 24 0.00017 0.012 16.7 0.3 1 21 474 494 474 495 0.96 12 24 0.016 1.1 10.6 0.9 2 23 567 588 566 588 0.97 13 24 0.002 0.14 13.4 0.1 1 23 592 614 592 614 0.96 14 24 0.083 5.7 8.3 0.5 1 15 619 633 619 642 0.78 15 24 0.0021 0.14 13.3 1.2 1 23 648 671 648 671 0.95 16 24 0.24 17 6.8 1.8 1 23 678 701 678 701 0.82 17 24 0.00011 0.0079 17.3 1.9 1 23 708 730 708 730 0.98 18 24 0.18 12 7.2 0.0 1 23 803 826 803 826 0.91 19 24 0.00011 0.0076 17.3 1.0 1 23 897 919 897 919 0.97 20 24 0.0017 0.11 13.6 2.2 1 23 923 945 923 945 0.98 21 24 0.0019 0.13 13.4 0.8 1 23 950 973 950 973 0.96 22 24 0.017 1.2 10.5 0.4 1 23 979 1002 979 1002 0.89 23 24 0.00056 0.039 15.1 0.2 1 23 1009 1032 1009 1032 0.95 24 24 1.4e-05 0.00094 20.2 0.6 2 23 1042 1063 1042 1063 0.97
Sequence Information
- Coding Sequence
- ATGGCTGCTTTGAGAAACCACATCAAGAGCGAGCATTCTAACGCTGACCACAACAGCGCTTTCTATAAAGTAGTGGACGATTTGAAAATCGATATCACAGagttaaaatgtaatatttgtCTAATAGATATTCCGGACACAGACACTCTTATGAACCACTTGTCTCGTGATCACGACAAACCTGTAAATTTTGATGTACCGTTTGGAGTATTACCTTATCGACAGGGACCAACTGGGCTCTGGATGTGCTTGGACTGCGACAAAACGTTTTCAGAATTCTCGCAGATCAACGGCCATTTACGTAGTCACGTAAAGATATTCACTTGTGATAAGTGCAGTGCCACGTTTTTATCTGAACATGGATTGCGTCAACATGAACGTAACTTCAAATGTTACAAAGCCACGTATAAACCACGTTTCGGGAAGTCTTTAAAGCATCGCAGTAACACAGAAATCATCCTTCAATGTTCCACGGCTCGTCCCTTCAGAACGTGGGGTCAAAACTTTAACTGTGTATTCTGCAGAGTACAATCCAATGATCCGAACGGTTTAAGAACGCATATGGCAACAAGACATGCCAATTACAACATCCAACATGTATTCAGCAGAAAACTAAGGAAAGAATTTCTCAAAGTCGATATTACAGACCTCCAATGCAAGCTTTGTTTCATGGCGATAGATTCTCTGGACGATTTAATAACGCATCTAAAGAATGATCACAAACAACCCATAAATTCGGATGTGCAACCAGGAGTGTTGCCTTTCAAACTCAACGACGGATCTAATTGGACGTGCGCTATATGCAAAATCCAGTTTTCTGATTTCATATCGCTAAAAAAGCACACTGCTGAACATTTTCAGAATTACGTTTGCGATACATGTGGAGAAGGATTTATAACAGAATCTGCTCTTATTGCTCACACGAAAATACCTCACGATAACAAATATACTTGCAGTCGATGCGTTGCCACATTCTCCACTCTTGAAGAGAGAATCGTTCATATAAAAACTCAGCATACAACCTTACCTTACATGTGTAACTACTGTAAAGAAAAACCCCGATTCGCTACATGGGAATTGAGGAAACGGCATTTAATGgagtttcataattataagcCTGGTGCTGAAATGTATGAGTGTACAACTTGCCATATGACATTTAAATCTAGATCTCAGAAATACCACCACAATGTGAAAGCACATCGCACTAAAAAGGAAACTGAATACAgACGCAGTGGACACACAGAAAATGAATCGTTGATAAAATTAGAGAGTGAGACTGCAGAAATAACGTTGAACGTGGAGAAGAAACGGTACCAAAGGAGTGCACGAGCTGAAGCTAGGCTGAATACTAAGAAAAACGCTAGCGTTATACTAGAATGCTGGACCGTCTGCCCGTTCAGATGGAGAAGGAATAGATTCAAGTGCTCCTACTGCGAGGAAAACTTCACCGATGCTAACTTACTCAGAAATCACGTCAGATTGTGCTCAACACAACATACTATGAAAGACATATACAGCAAGTTCAAAGAAATGAATATACTGAACGTAGACTTAACTGATGCCGTTTGCCGTATTTGCTCTTGCCCTCTAACAGACATAAATTTAATGCGTGAACATGTCACTCAGCATGGTTACAAGATAGACTCAAACCACCCAGATGGGGTCATACCGTTTTGCTTAAATAAAGAGTCTTGGAGGTGCCTCATATGCCAGGAGAAGTTTAATAACTTTCTTAAATTGTATGAACACATGAATTCGCATTACCAGCATTACATATGTGCTATATGTGGTAAAGCTTACATGACTGCGACTAGATTGAGGAAGCATTCAGAGGTTCACGTGTCGGGGTCTTTCCCTTGTAAAGATTGCGGCAGGATATTCACGATGCGTGCCGCCAGGGATTACCACAAAGCTCATGCGCACGCCAAGGCACCTCGCTATGAATGCCCACACTGCAATAAAAGATTTGATGGCTACTACGACAGGATGAATCATTTAAACGAAGCTCATCGAGAAAAAGAAGTTACTTACAATTGTGACCACTGCGAGTTGTCTTTTAAAACGAGCGGGAAACGCGCGTTTCATGTTAGATCAGTTCATTTTCCACCTGAACGTGATTTTCAGTGCAAATTTTGTGAATGGCAGTTTAGGACTGGTTATGAATTGAAGAGGCATATGGTTAAGCATACGGGTTCCGATTTAGAGAACACGGGGACAAGAGTAGTCTCTGGTAGGAAGTTAAAAGAGATAGTATCCGCGCGTCAGATGCGCCGGCGGCGTCGAGCGAACAACGAACTGCCAGAAGAATCAGAGGAGCGTATAGCTGTAACGATGATGCGAAGGAACGCGTTGACAATTCTAGAATGTTCCACCGCGTGGGCCTTCAGATGGTTTCACGGTGCCTTTTATTGTGCTTACTGCGACCTCAAATTTGTTGATGTCGCTCCTTTAAGAGGGCACGTAGAAAATGAGCACTTACACGAAGCACCCACTAAAAAACGCATCTTTGCAAAACTAACAGAGAACAATAGCGTGAAAATAGACGTGGCTAACCTTAAGTGCAGATTGTGCGATATAGACCTAAACTATTTATGTTTAAAAGATCATATAGTAACGGTTCACGGAATAAACTTGCAACTAGGCTACAGTGATGGTATCCTTCCCTTCAAATTGGATCAATACGGATTCGACTGCCAGATATGTTATGAACGATTCGCCAGCTTTTCAAAACTAAATGAACACATGAACACTCACTATCAGAACTACATTTGTAATCATTGTGGAAAAGGGTATGAATCAATGTCTCGGTTTCGGACTCACGTCCAATCTCACGAGCTCGGCCAGTTTCGATGTACCCATTGCGGAGAAATATTTCCATCGCGGGGAGCACGAATAACCCATAGATTACGAGAGCACAAAAAAGGTATTCGGTACGCGTGCCCTCGATGTCCAGAAACGTTTAAGACTTTTTATACGAGAGCTAAACATCTGGTAGAAGATCATGGGGAACCCAAGAAAGTCTATAACTGCCCTACATGCGGAATTTCTTTTGATACTAGTAGCAAGCGTGCAGCGCATGTCCGTGCAAAGCATTTGACAGATCAGAAAATACTGCCGCGCGAATGTCCACAGTGCGCCAAACGTTTCGTCAGCAAATCCAAACTAGAAAGACATTTAAAAGTACACGGAATGAATTACGAAAACATGAGCAACTCGCTAACATAA
- Protein Sequence
- MAALRNHIKSEHSNADHNSAFYKVVDDLKIDITELKCNICLIDIPDTDTLMNHLSRDHDKPVNFDVPFGVLPYRQGPTGLWMCLDCDKTFSEFSQINGHLRSHVKIFTCDKCSATFLSEHGLRQHERNFKCYKATYKPRFGKSLKHRSNTEIILQCSTARPFRTWGQNFNCVFCRVQSNDPNGLRTHMATRHANYNIQHVFSRKLRKEFLKVDITDLQCKLCFMAIDSLDDLITHLKNDHKQPINSDVQPGVLPFKLNDGSNWTCAICKIQFSDFISLKKHTAEHFQNYVCDTCGEGFITESALIAHTKIPHDNKYTCSRCVATFSTLEERIVHIKTQHTTLPYMCNYCKEKPRFATWELRKRHLMEFHNYKPGAEMYECTTCHMTFKSRSQKYHHNVKAHRTKKETEYRRSGHTENESLIKLESETAEITLNVEKKRYQRSARAEARLNTKKNASVILECWTVCPFRWRRNRFKCSYCEENFTDANLLRNHVRLCSTQHTMKDIYSKFKEMNILNVDLTDAVCRICSCPLTDINLMREHVTQHGYKIDSNHPDGVIPFCLNKESWRCLICQEKFNNFLKLYEHMNSHYQHYICAICGKAYMTATRLRKHSEVHVSGSFPCKDCGRIFTMRAARDYHKAHAHAKAPRYECPHCNKRFDGYYDRMNHLNEAHREKEVTYNCDHCELSFKTSGKRAFHVRSVHFPPERDFQCKFCEWQFRTGYELKRHMVKHTGSDLENTGTRVVSGRKLKEIVSARQMRRRRRANNELPEESEERIAVTMMRRNALTILECSTAWAFRWFHGAFYCAYCDLKFVDVAPLRGHVENEHLHEAPTKKRIFAKLTENNSVKIDVANLKCRLCDIDLNYLCLKDHIVTVHGINLQLGYSDGILPFKLDQYGFDCQICYERFASFSKLNEHMNTHYQNYICNHCGKGYESMSRFRTHVQSHELGQFRCTHCGEIFPSRGARITHRLREHKKGIRYACPRCPETFKTFYTRAKHLVEDHGEPKKVYNCPTCGISFDTSSKRAAHVRAKHLTDQKILPRECPQCAKRFVSKSKLERHLKVHGMNYENMSNSLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -