Basic Information

Insect: Agonopterix alstromeriana
Gene Symbol: -
Assembly: GCA_963924505.1
Location: OZ004688.1:1365534-1384292[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.011 0.72 10.9 2.1 1 23 288 310 288 310 0.98

2 11 0.086 5.5 8.1 3.1 2 23 318 340 318 340 0.96

3 11 0.96 62 4.8 2.1 1 23 377 399 377 399 0.96

4 11 0.15 9.4 7.4 4.2 1 23 404 427 404 428 0.96

5 11 0.017 1.1 10.3 0.2 1 20 459 478 459 479 0.95

6 11 0.0082 0.53 11.3 0.7 1 23 488 511 488 511 0.92

7 11 2.3 1.5e+02 3.6 0.0 1 23 516 539 516 539 0.85

8 11 1.2e-05 0.00078 20.2 2.7 1 23 544 566 544 566 0.98

9 11 6.7e-06 0.00043 21.0 2.8 1 23 572 594 572 594 0.97

10 11 0.0077 0.5 11.4 1.2 1 23 600 623 600 623 0.91

11 11 4.4e-05 0.0028 18.5 0.7 1 23 629 652 629 652 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.011	0.72	10.9	2.1	1	23	288	310	288	310	0.98
2	11	0.086	5.5	8.1	3.1	2	23	318	340	318	340	0.96
3	11	0.96	62	4.8	2.1	1	23	377	399	377	399	0.96
4	11	0.15	9.4	7.4	4.2	1	23	404	427	404	428	0.96
5	11	0.017	1.1	10.3	0.2	1	20	459	478	459	479	0.95
6	11	0.0082	0.53	11.3	0.7	1	23	488	511	488	511	0.92
7	11	2.3	1.5e+02	3.6	0.0	1	23	516	539	516	539	0.85
8	11	1.2e-05	0.00078	20.2	2.7	1	23	544	566	544	566	0.98
9	11	6.7e-06	0.00043	21.0	2.8	1	23	572	594	572	594	0.97
10	11	0.0077	0.5	11.4	1.2	1	23	600	623	600	623	0.91
11	11	4.4e-05	0.0028	18.5	0.7	1	23	629	652	629	652	0.98

Sequence Information

Coding Sequence: ATGCAATGGATTCCATTTGTGAAGGTAGAAAACAGCATAATATCTGAGTTGCTGGCGTGTCGAGTCTGCCTCGCTACAGACTCGAAACTGTTTGATTtgcatacaaataaattaactaaCATCTTTGGTGATCTTACAGGCACTCAGGTGTCTAAAAGTGATGGATTGCCTCAACATATATGTCACATCTGCTACGTGATGCTGGTCAAGTCCTCCGCATTCAGAGCCAAGTGTCGCAAAGTGCACGTGCTACTGCAGGACGCGAGGGTTAAAACACCAATGATGACAACAGAGTACATACAAACAGTAGACCGATCTCAACTAAAACTACAGTTAACTTTCACAAACGCATTGACGTTAGATTTTCCACCGACTGAAGAACCAATAATACCGGAACCAGTTATTTTAACAAACGAACAAAACCCCTTAGTTAAAGCTGAACCTCTAACAGGATTCACCGATGACACAACCAATGATTGGAACGAACCAACCGACAACTATGAATTCACTGAAACAAAATCACAATTGAGAGAGGCTTTAGAAAAGGAAACCGTAAAAAATGAAACAGATAATGATACGTTAATAGAAATTTACTCGACtcagaaaaaagaaaaagtaacaGAAGAAAAATGTAATAAGAAACCTCCACAGAGAAAAAAGAGAGAACCAGCAAAACCGAAAgttgaaaaagtgaaaaagGTTAGAGAAAAGAAACGTAAACGGCCGTTCAATATGAAGTTCATAGAAGACTTTGCTGGTTTTGCTGAGACATATAATTGTGAAGTGTTGTTTCTAACGAGGGAGCAACAGTTGAGGGAGGTTGAGGAACGGAAAGAATCTGAATCGTTCAAGAAGTCGAGGTTTAAATGTACTATCTGTTACAAGGGTTTTATGAATGTTAGTGCTCATAAGAATCATATGGCTACTCATGATAAGGCCAGTGGTGACAACGTGTGTGACGTATGCCTCGCTCGGTTCAACATCAGAGAGCATCTTTTGAACCATCAGCGTCGCTGTCACAAGTATAACTTCATCTGTAAGATCTGCGAGCACGTCAGTAAAGTTGTACGTGTGTCTCGCTCGGTTCAACATCTGTTGAACCATGAGCGTCGCTGTCACAAGTATAACTTCATCTGTAAGATCTGCGAGCACGTCAGTAAAGTTGTCACAAACGCAAAGAATCATTTCAAAAAGCACGAGGGCGTCAAATATGAATGTAAACCCTGCGAGAAACAGTTCAATACAATGAGTACGTATCTGAATCACAAGCGGCAGTACCACCACTCTGTGACGTGTGATGTTTGTAAGGAGACTGTCACCGGAGGCTCCAAGGGGCTGGAGGAACACAACCAGCAGAGACATCTCACTGTGAAGTTCCCGTGCGAGGCGTGTAGGAAGCAGTTTGAGAGCCAGGAGGCATACAACAGACATCTGTCGCCGGACGGCTTCTGCAATATTGATTTTCCGTGTATAAAGTGCGGAGAGAACTTCACAAGTAAACCGTCGCTGCACGATCACAGAGAGTCCGTACACAATGAAACTCTGTTCAGATGTGAGGAGTGTCCGGCAGCATTGCCGACGGGTCGCAGACTGGCAGCGCACTGGCTCGCGAAACATTCAGAGATTTCATACATGTGCGAGATATGCGCCAAGAGATACAAGACTAAACTACAGTTGCGAAGACATCAACGTAAGCATACGGGGGAGAAGCCGTTCGCGTGCACGACTTGCCCAAAGCGGTTCACACAGAAATTCTTCTTAAAGGAGCACATGAACACACATACTGGAGAGCGTCCGTACAAGTGTGCACACTGCGACGAAACATTTCGGTCGTACGCTGTCAGATACAAACATATCCTACTGGCTCATCGCAAGGAGCGCCCCTACTCGTGCCACCTCTGCGAGAAGTCGTACGTGATCGCGTCGGACCTCAAGATGCACGTGCGCACCATCCACATGAAGATACCGCGCCCGCCCCGCAACCCGCCCAACAGGCGCCCCAGGACCAAGAACAATatattataa
Protein Sequence: MQWIPFVKVENSIISELLACRVCLATDSKLFDLHTNKLTNIFGDLTGTQVSKSDGLPQHICHICYVMLVKSSAFRAKCRKVHVLLQDARVKTPMMTTEYIQTVDRSQLKLQLTFTNALTLDFPPTEEPIIPEPVILTNEQNPLVKAEPLTGFTDDTTNDWNEPTDNYEFTETKSQLREALEKETVKNETDNDTLIEIYSTQKKEKVTEEKCNKKPPQRKKREPAKPKVEKVKKVREKKRKRPFNMKFIEDFAGFAETYNCEVLFLTREQQLREVEERKESESFKKSRFKCTICYKGFMNVSAHKNHMATHDKASGDNVCDVCLARFNIREHLLNHQRRCHKYNFICKICEHVSKVVRVSRSVQHLLNHERRCHKYNFICKICEHVSKVVTNAKNHFKKHEGVKYECKPCEKQFNTMSTYLNHKRQYHHSVTCDVCKETVTGGSKGLEEHNQQRHLTVKFPCEACRKQFESQEAYNRHLSPDGFCNIDFPCIKCGENFTSKPSLHDHRESVHNETLFRCEECPAALPTGRRLAAHWLAKHSEISYMCEICAKRYKTKLQLRRHQRKHTGEKPFACTTCPKRFTQKFFLKEHMNTHTGERPYKCAHCDETFRSYAVRYKHILLAHRKERPYSCHLCEKSYVIASDLKMHVRTIHMKIPRPPRNPPNRRPRTKNNIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -