Aals020567.1
Basic Information
- Insect
- Agonopterix alstromeriana
- Gene Symbol
- -
- Assembly
- GCA_963924505.1
- Location
- OZ004686.1:8105309-8108643[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.047 3.1 8.9 3.7 1 23 228 251 228 251 0.94 2 17 0.0075 0.48 11.5 0.9 2 23 256 277 255 277 0.96 3 17 9.2e-05 0.0059 17.5 0.2 1 23 307 330 307 330 0.96 4 17 0.00017 0.011 16.6 1.0 2 23 395 417 394 417 0.96 5 17 0.12 7.9 7.6 4.7 1 23 423 446 423 446 0.91 6 17 3.8e-05 0.0025 18.7 0.3 3 20 452 469 450 471 0.93 7 17 0.021 1.3 10.1 0.7 1 23 479 502 479 502 0.95 8 17 0.095 6.1 8.0 0.3 2 23 508 530 507 530 0.94 9 17 0.9 58 4.9 0.2 9 23 551 565 541 565 0.85 10 17 0.0023 0.15 13.1 1.8 1 23 571 593 571 593 0.98 11 17 2.2 1.4e+02 3.7 0.9 2 23 602 620 602 620 0.90 12 17 0.0016 0.1 13.6 2.9 2 23 631 652 630 652 0.95 13 17 0.18 12 7.1 0.2 2 23 657 677 656 677 0.96 14 17 2.4e-05 0.0015 19.3 1.1 1 23 720 742 720 742 0.98 15 17 0.00054 0.035 15.0 3.5 1 23 748 770 748 770 0.97 16 17 0.69 44 5.3 2.6 1 23 776 798 776 798 0.96 17 17 1.9 1.2e+02 3.9 2.5 3 23 805 826 805 826 0.96
Sequence Information
- Coding Sequence
- ATGGAAAATGCAGACCTAAATGAAACAGACATGTCAGGACATAACTCAACTTTAGTAAAATCCATTGAGGTGAAACTGAGGAATATACTGTACTCGGTAAACTTTTGTGGTGTTTGCTTTGAACCCGACAATGATTTGTTTTCTTTGAACACAGAGATTCAGTGCTTTGGAAGATATgatcaaataaaaacaatcaaaGATGCAGTTCAATATTTGTTTTATGATGTTGACAATATCCCAGCTACTGAATATCTATGTAATAAATGCAAAGAAACAATTATAGATGCTTACAGATTTATAGAAAAATCTAAAGATACTACAAAGCTTatcaataattatgttaatgatTTCGTATCTAAAACAATCGATTTAAATAATCAATTAGAACCAAATTGCAGCTACGAAGAttcaaatgtaattattgtaCTAGAAAACCACGAGAAAACTAATGAAAACCCTATAGAAATTAAAGTTTTAGAAACTGAGACCAAAAAACTAGAAACTCGAAATAAAAGAGATGACGTTGCACAAAAACTAGCCAATAGCAAGAAAAGAGCAGCAACTAAAAACAGTGAATTACCAGCAAAAAAGGCAAAAGAAACTATATTAAATAGAGAAAATGAAACAAAGATCCAGCAAGTAATACCAATAGTAAAAAACATGATACCAAGAACTGAAGGGTATGAATGTACTAAATGTAAAGTAATATTCACTACGTTTAAACATTGGAAAGATCATGAAAAAGATTTTCATAAGAAAGCAGTTGAATGCGAAATATGTTTCAAAACCTTTGAGTCACATAGAGTATTAATTGAACATTACAAATTACACAACAAACTTAAATGCCGTATctgtaacaactttgttttaGATACAAAATTGACAGAGCATTTGAGATTAAACCACGAAAACGAGACTCATTCCTGCGAATATTGCGACAAAATATATTACACCGCTCCAGCATTAATAGCCCATATAAAAATCAGTCATTTCAAAGTTAAAACTGTAGATGAAGACGATGAAAATCCACAATGCTTAATGTGTctacaatattttaagaaaGATGACCTAAGAACTCATAAATGCAGAGATAAATGTCCGGATTGTACAGAAATACCTTGCATACATTACAAATACCTCATTCATTTCAAAGAACAAGTTTTGAATCACATGAATAAAATCAAATGTTTAGATTGTGATTATATGTGTAGAAGAAAAGATAGTTTAATTGCTCATGTGAATAGAGAGCACATAGACTATCATCCTTTCAAATGTAGCGATTGTGGGACtcaatttttctcaaaatacaGATTGAAATGTCACATATCAGCATTTCATAAAGAAACTATCAACTGTGAATATTGTGATAAAGTATTTAACAACAAATCACTTTATAATAGACATGTAACTTTATGCAAAATCGAAAGGAGACCGTTTGCATGTGACAAATGTATGGCCTCATTCATAACTGCTGATGAATTATGTAATCATGAGAAAATAAAACATAGCGACGAAATAATACCCTGCGATTTAtgcaacaaaatatttttaactgaAGAAAACATGAAAGAACATAAATTAAGATCCCATAGAAGTGTACAAATGAGAAAACAAATGAAATGGGAGTGTTTACTATGCTTTAAAGATAACAAATTCGATACTAAGGGTGAATACAGACAACATATGGAATCTCACGGCCCTGATGTCAAATATATATGCAAAATATGTAGCATACAATGTAAAGATTTACAAAATTTGCAATGGCATAACAGATCACATCGAAATAAGGTTaaaaaaccagaaaaatgtATGATATGCGATAAGGTAGTCATGTCTCTCCGCACCCACATGTCTAGACATCGAATTCTGAAGAATACCTCCCTTCAATGCATCTGTGATAAATGTggcaaaacatttttatcaaaaaccCAGCTAAGAGTACATAGAACGATACATTTAGAAAGGGTTCCATGTAAAGTGTGCTTCAAACCAGTAAAACCGTCTACAATGTACAAACACTTGCGTATCCACAAAGGCATACCGATTAAAAAGCAAGGAAGACGATGTACTGCAGTTTGCGAATATTGTGATTATATTCCATTAAATCTTCCCAGTTTAGAAGCTCATGTGAATAGATATCATTTGAATATAAAACCTTACATTTGTCATGTCTGCGGAGAAGCTTTCTGCACAGAAAATGCTTTGAAACAACACGGCAGAGTCCATTCCGACGAAAAGAAGTATACATGTGAATTGTGTAATAATAAATTTCGGTACCGCAACAGTTTGAGAAAACATATGTTTCTGCACACCGGTGAAAAGTCTCATATATGTGATGTCTGTGGTGATAGATTCATTTGTTCAAGTTCTTTGAACgaacataaattaaaacataGGGTGAAAAGTATAGGATGTCCACTTTGTGACGCAATGTTTCACAGTATGAAATTAATGAGAATGCATTTTAAGAAGCAACATTGGAAAGATAAAGAAAGGAAATTTAATCCTAAAGAAATTTTGGATGAGGAATACCATTATTTGTTTGAAGATCGTAGGAAAGTTACTATTGATGTTTATAATTCGGGTTAA
- Protein Sequence
- MENADLNETDMSGHNSTLVKSIEVKLRNILYSVNFCGVCFEPDNDLFSLNTEIQCFGRYDQIKTIKDAVQYLFYDVDNIPATEYLCNKCKETIIDAYRFIEKSKDTTKLINNYVNDFVSKTIDLNNQLEPNCSYEDSNVIIVLENHEKTNENPIEIKVLETETKKLETRNKRDDVAQKLANSKKRAATKNSELPAKKAKETILNRENETKIQQVIPIVKNMIPRTEGYECTKCKVIFTTFKHWKDHEKDFHKKAVECEICFKTFESHRVLIEHYKLHNKLKCRICNNFVLDTKLTEHLRLNHENETHSCEYCDKIYYTAPALIAHIKISHFKVKTVDEDDENPQCLMCLQYFKKDDLRTHKCRDKCPDCTEIPCIHYKYLIHFKEQVLNHMNKIKCLDCDYMCRRKDSLIAHVNREHIDYHPFKCSDCGTQFFSKYRLKCHISAFHKETINCEYCDKVFNNKSLYNRHVTLCKIERRPFACDKCMASFITADELCNHEKIKHSDEIIPCDLCNKIFLTEENMKEHKLRSHRSVQMRKQMKWECLLCFKDNKFDTKGEYRQHMESHGPDVKYICKICSIQCKDLQNLQWHNRSHRNKVKKPEKCMICDKVVMSLRTHMSRHRILKNTSLQCICDKCGKTFLSKTQLRVHRTIHLERVPCKVCFKPVKPSTMYKHLRIHKGIPIKKQGRRCTAVCEYCDYIPLNLPSLEAHVNRYHLNIKPYICHVCGEAFCTENALKQHGRVHSDEKKYTCELCNNKFRYRNSLRKHMFLHTGEKSHICDVCGDRFICSSSLNEHKLKHRVKSIGCPLCDAMFHSMKLMRMHFKKQHWKDKERKFNPKEILDEEYHYLFEDRRKVTIDVYNSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -