Basic Information

Insect: Agonopterix alstromeriana
Gene Symbol: -
Assembly: GCA_963924505.1
Location: OZ004688.1:3969709-3984950[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.2 13 7.0 0.7 2 23 235 257 234 257 0.95

2 10 0.0029 0.19 12.7 1.1 2 23 263 284 262 284 0.96

3 10 0.033 2.1 9.4 0.8 2 23 317 339 316 339 0.94

4 10 0.01 0.66 11.0 0.3 2 23 344 365 343 365 0.97

5 10 0.0027 0.17 12.9 2.5 2 23 373 395 372 395 0.96

6 10 0.0032 0.21 12.6 0.0 2 20 407 425 407 427 0.94

7 10 0.015 0.96 10.5 0.6 1 23 439 462 439 462 0.93

8 10 0.00027 0.017 16.0 4.4 1 23 468 491 468 491 0.96

9 10 1.4e-06 8.8e-05 23.2 0.1 3 23 502 522 500 522 0.97

10 10 0.0013 0.087 13.8 1.0 1 23 528 551 528 551 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.2	13	7.0	0.7	2	23	235	257	234	257	0.95
2	10	0.0029	0.19	12.7	1.1	2	23	263	284	262	284	0.96
3	10	0.033	2.1	9.4	0.8	2	23	317	339	316	339	0.94
4	10	0.01	0.66	11.0	0.3	2	23	344	365	343	365	0.97
5	10	0.0027	0.17	12.9	2.5	2	23	373	395	372	395	0.96
6	10	0.0032	0.21	12.6	0.0	2	20	407	425	407	427	0.94
7	10	0.015	0.96	10.5	0.6	1	23	439	462	439	462	0.93
8	10	0.00027	0.017	16.0	4.4	1	23	468	491	468	491	0.96
9	10	1.4e-06	8.8e-05	23.2	0.1	3	23	502	522	500	522	0.97
10	10	0.0013	0.087	13.8	1.0	1	23	528	551	528	551	0.95

Sequence Information

Coding Sequence: atgAGATGGTTATATTGGGAAGCTCTTTGTTCACCTCATGATATTACTGAAAGTTTGTTTCAGCTGTCCAAGAAGGAAGACAAAGTGTGTTGGGAATGCAAAGCGAGCATTATTAAAATGATATCGTTCCAAGAGAAAGTGTTGAAAGCACAGGCGTTACTCTCAAAAGTGTTTGACGGGACACAGCAAGAACAAGTATTACAAAGCCTATCTGCCTTGTCTACTACAACTAAAGATATCTACGATGAAACGATCCAAGATGACAACGCAGCcaaatttgtgttttatttcacTGAAGTTAAGGTTGAGAATGAAGCAGAAGGGATGGATCGTCCGGCGCCGATGGACGATTCCGACTCGGAGACTGAGAGCGAGACTGAGTTTAAAGATTTTAGAGAAAAGTTGGAGGTCAAAGATGAGAAAACAGTGAAAATGGAAGCACCAAGTCTTGAAGTACCTTACACGAAAGAAGTCAAGAGATTGGACCGGGAGATAGATAGCGACTCTGAATTCACTCAATTCTGTAGGATGAGATTGCAGGaaaaatacaTAGCAAGTAAATCTGGCACAGAGAAAATTTACAAAGTAGTGGAGGGTAATGCCACGGTGGACGCTTACAAAACTAAACCAGTGACGGAGGAGGACCTCCTCGCGCTGATGGAGAGGAAACGATCTAATTGCAACTTTAAGAACAGTAGGCTTAAGTGCGTTTCTTGCGTGGAGGGGTTCAACTCACAGAAGAAGTACGATGAACACATGAATAGTAAGCACatagccagaaagctaaagtGTAGAATATGCGAGCAGACATTCTCCGCGCAGAAACATCTGGATGAACACGCTAAGATACACACTAAGAGCTTCGTGTGCTGCGTGTGCGGGTCGGAGCACTTCCAGGAGTTCGCCATTTGGAACCACTACGAGACGAGGCACGAGCTCGTACCGAAGTACTGCAAGCTGTGCAACGAACGACTACCCACAGTTAAGGCGCTCAGGAAGCACAAACGGGACGTACACGAGCCTCTCGTCACCTGCGACGTGTGCCTGTCGCAGTTCAAAGGGAAGCCCAGCCTCGAACAACACATGATGCGTCACATGGGCCAGAGGAACAAGGTGGAATGTATGGAGTGTCACAAGCTGTACAACGGACCGTCGTGTCTGCGCGCACATATGAAGAGGCAACACTCCAAGACCAACAACAAGGAATTGGAGGCGGCGTATTGTCCAGAATGCGACGTTCAATTCAAAGACCGGGGCCTGTACAAGGCTCATCTCGCATACACGTTAAAACACAATCCCACGCAGAATTTCAAACACAGATGCGAGCAGTGTAATAAAGGATTTATATCAAAAGGAATTCTACTCTACCACCTGGAATCAGTACATAGCGACCTTAAGAAATATGACTGTGAGATGTGCAAACAGGCGTTCAAGACGAAGAGATGCCTGCGCAAGCACGTGCGCGAGAAACACGAGGGCAAGCCGAAGCCGAAGAACCAGATCTGTGAAATATGCGGCAAGGGCTTCATTTCGAAAGGTCAGTTAGCGCAGCACATGAACAGCCACACGGGCGCGAGGCCGTTTGTCTGCACAACGTGCGGCGCAACCTTCGGGCACAGTGGCGCCCTCTACACACACAACCGACTGAAGCACGCTACCAAGCAGAGCCTCGCCAGGAAGCGCTCCACCTCCACCCTGCAGCCCGGCGATACTGCCGAGTAG
Protein Sequence: MRWLYWEALCSPHDITESLFQLSKKEDKVCWECKASIIKMISFQEKVLKAQALLSKVFDGTQQEQVLQSLSALSTTTKDIYDETIQDDNAAKFVFYFTEVKVENEAEGMDRPAPMDDSDSETESETEFKDFREKLEVKDEKTVKMEAPSLEVPYTKEVKRLDREIDSDSEFTQFCRMRLQEKYIASKSGTEKIYKVVEGNATVDAYKTKPVTEEDLLALMERKRSNCNFKNSRLKCVSCVEGFNSQKKYDEHMNSKHIARKLKCRICEQTFSAQKHLDEHAKIHTKSFVCCVCGSEHFQEFAIWNHYETRHELVPKYCKLCNERLPTVKALRKHKRDVHEPLVTCDVCLSQFKGKPSLEQHMMRHMGQRNKVECMECHKLYNGPSCLRAHMKRQHSKTNNKELEAAYCPECDVQFKDRGLYKAHLAYTLKHNPTQNFKHRCEQCNKGFISKGILLYHLESVHSDLKKYDCEMCKQAFKTKRCLRKHVREKHEGKPKPKNQICEICGKGFISKGQLAQHMNSHTGARPFVCTTCGATFGHSGALYTHNRLKHATKQSLARKRSTSTLQPGDTAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -