Aals010873.1
Basic Information
- Insect
- Agonopterix alstromeriana
- Gene Symbol
- ZEB2
- Assembly
- GCA_963924505.1
- Location
- OZ004672.1:3183797-3198453[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.14 8.9 7.5 5.3 1 23 266 288 266 288 0.99 2 13 0.074 4.8 8.3 1.2 1 23 322 344 322 344 0.94 3 13 0.00016 0.01 16.7 1.0 1 23 349 372 349 372 0.96 4 13 0.78 50 5.1 0.1 2 23 377 399 376 399 0.92 5 13 0.038 2.4 9.2 0.0 2 20 410 428 410 430 0.95 6 13 0.0063 0.4 11.7 0.0 3 23 440 460 440 460 0.97 7 13 0.088 5.6 8.1 0.8 3 23 480 501 479 501 0.97 8 13 0.28 18 6.5 2.3 2 23 515 536 514 536 0.96 9 13 4.9e-05 0.0032 18.3 4.8 1 23 542 564 542 564 0.97 10 13 0.0021 0.13 13.2 0.1 1 21 572 592 572 593 0.96 11 13 3.3 2.1e+02 3.1 0.1 8 22 893 907 892 911 0.89 12 13 0.77 50 5.1 0.0 8 23 972 987 971 987 0.93 13 13 0.00024 0.016 16.1 3.7 1 23 993 1016 993 1016 0.95
Sequence Information
- Coding Sequence
- ATGGAAGATCCGGATCGTACTTTCTGTAAACTGTGCTTAGTGACCgatgttaaaatgtacagtttgaaCACGCCTTCATTACTCGAAGCGTATACACAACTCCTTCAAGTTGTTGTCTGTGCAGATTCACAAACATTTATATGTTACCAGTGCACCAGCCAACTGCAAAAGCATCATGAATTTCGTTTGAAGTGCATGACGGCACTCAATGTGTTAACATCTCTTGATGTGGACCACACCATGatatCTAAAGAACTCATTCAAAACATTGACAGAAACTTTTTCAATTTGGATTCTAAATTATCGTTTTGTTCTATTTTGGTGTGTAGTAGTAATGACCAATATTTGGTGCCGAAAGATTGTTTTGATACTAAAGTAAATTACAATAAAGATGAAGTTGGTACAGGACTAGGAATTGAAATAGAGGTGCCGGCAATTGCCATCAAACCTGATACTTGTGAAGCTAATAATGATACATTTGAAAGTCACAATGTTGCTATGAATATATCAAATGAAAGAATTCTGTCAAACAATGTCCCTAAAATTAAActggaaaaaaaaactttaccacAATCTAAGAAAAGTGCCCGGAAGCctgttaaaaatgttaaaaaatcaactgctacTGTTAAACCTTCAAATAGACCAACAAAATCTAAACTCAAAGATATTGAATTGGCAGACGATACAGACGATTATTTCAAAGAGTGCGGAGATATACAGCATATGACCGAAGAGGATGCTAAAAATGATATGCTTTCAAGAAAAGAGTCTGATAATTATAAGTTTAATCCATACAAAtgtgagctttgctacaaaGGCTTCACTTGCAAAGttacatttgataatcataTGAAGAAACATAGCTCGGAATTTGGAAGTTACGAATGTGAATTCTGTCACATAAGGTTTCCCACGAAGAGACGCATGTATTGTCACAATTTGCGAAGCCACGTGCGCAAATATGTCTGTAAAAAGTGCCCCTACGTATGCAATAGCAGaaatcaAGCTAATTTACACGTGGATCTTCATAAGGGCAAGACGTTTGAGTGCAACGAATGTGGAGAAAGCTTCAGAATGCCGAACACTCTGTCCACCCACAAAAGTAAGAAACATTCGAAGGAGATGGTGTGTGAACTGTGCGGCAGTTCGTTCGGCTCTCTAAAGGGCATCATTGCACACAAGAATTTAACACATAGACAGGATAGTACAGAGCTGCTGGGTCCCAAATGTGAGGAGTGTGATGTTCAGTTCGCGACAGAAACCGCGTGGAAGCGACATCTGGTGATCTCCTCTAAACATATTGTCATTAACGGGTGTGAAGAATGTGGTGAGATATTCCCTAGCGCGGAAGCCCTGAAGTACCACTCGACTATgcaccctaagaggaaggggGACATTGGTCGGTACATCTTCAGGTTTGTGCCGCCCGCAGCTTGCAAGATCTGCAACAAATGGCTGCAAACCCGCACCGACTACAAGGAGCACATGAAGACGGAGCACCCTCGACCGAACAAGAAGGGGCCGGTGGCCTCGCCGCTAGTGTGCGAGGTTTGCGGCGATAAGTTCAAGAGTCTGTGTTTCTTCCGGGCGCACAAGCTGAAGCACACCGGGGAACGTCCTTACGAGTGCAGCGATTGCGGAAAGAGGTTCCGACACCGCTACGCTCTTTGCCTCCACGAGAAGTTACACTCCCGCACCGGCGCACACTCGTTCCAGTGCGACATGTGCCAGAAGCTGTACGGTTCCAAGGCTGGCCTCGAGAGACATATTAAGGTAAGCAAGGCACCGACATGCGCTGTGCCTAGACGAGAAGATACACTCGCACACCGGCGCCGATGCCTTCCAGTGGACCAGAAGCGGTACGATACCAAGGCAGGCCTCGAGAGAAATATCAAGGTAAGCAATGCACCGGCATGTCCCTGCACGAGAAGATACACTCGCGCACCGGCGCCGACGCGTTCTAGTGCGAAGAAGCTGTATGATACCAAGGCTGGCCTCGAGAGACATATCAAGGTAAGCAATGCACCGGCATGTCCCTGCACGAGAAGATACACTCGCGCACCGGCGCCGACGCGTTCTAGTGCGAAGAAGCTGTATGATACCAAGGCTGGCCTCGAGAGACATATCAAGGTAAGCAATGCACCGGCATGTCCCTGCACGAGAAGATACACTCGCGCACCGGCGCCGACGCGTTCTAGTGCGAAGAAGCTGTATGATGCCAAGGCTGGCCTCGAGAGACATATCAAGGTAAGCAATGCACCGGCATGTCCCTGCACGAGAAGATACACTCGCGCACCGGCGCCGACGCGTTCTAGTGCGAAGAAGCTGTACGATACCAAGGCTGGCCTCGAGAGACATATCAAGGTAAGCAATGCACCGGCATGTCCCTGCACGAGAAGATACACTCGCGCACCGGCGCCGACGCGTTCTAGTGCGAAGAAGCTGTATGATGCCAAGGCTGGCCTCGAGAGACATATCAAGGTAAGCAATGCACCGGCATGTCCCTGCACGAGAAGATACACTCGCGCACCGGCGCCGACGCGTTCTAGTGCGAAGAAGCTGTATGATACCAAGGCTGGCCTCGAGAGACATATCAAGGTAAGCAATGCACCGGCATGTCCCTGCACGAGAAGATACACTCGCGCACCGGCGCCGACGCGTTCTAGTGCGAAGAAGCGGTACGATACCAAGGCTGGCCTCGAGAGACATATCAAGGTAAGCAATGCACATGTCCCTGCACGAGAAGATACACTCGTGCACCGCCGCCGATGCCTTCCAGTGGACCAGAAGCTCTACGGTTCCAAGGCTGGCCTCGAGAGACATATTAAGGTAAGCAAGGCACCGACATGCGCTGTGCCTAGACGAGAAGATACACTCGCGCACCGGCGCCGATGCCTTCCAGTGGACCAGAAGCGGTACGATACCAAGGCAGGCCTCGAGAGACATATCAAGGGTCACCTCGGAATTCGCCCATTCGAATGTTCATATTGTCACAAATCTTTCACTTTCAAGTATGAAGTGACAATGCATATAAACTTCGTACACTTAAAGAAGCCGTGGCCGAAACGAATCAGAACCAAACGGAAGGCGAAAGAGGAAAATTAA
- Protein Sequence
- MEDPDRTFCKLCLVTDVKMYSLNTPSLLEAYTQLLQVVVCADSQTFICYQCTSQLQKHHEFRLKCMTALNVLTSLDVDHTMISKELIQNIDRNFFNLDSKLSFCSILVCSSNDQYLVPKDCFDTKVNYNKDEVGTGLGIEIEVPAIAIKPDTCEANNDTFESHNVAMNISNERILSNNVPKIKLEKKTLPQSKKSARKPVKNVKKSTATVKPSNRPTKSKLKDIELADDTDDYFKECGDIQHMTEEDAKNDMLSRKESDNYKFNPYKCELCYKGFTCKVTFDNHMKKHSSEFGSYECEFCHIRFPTKRRMYCHNLRSHVRKYVCKKCPYVCNSRNQANLHVDLHKGKTFECNECGESFRMPNTLSTHKSKKHSKEMVCELCGSSFGSLKGIIAHKNLTHRQDSTELLGPKCEECDVQFATETAWKRHLVISSKHIVINGCEECGEIFPSAEALKYHSTMHPKRKGDIGRYIFRFVPPAACKICNKWLQTRTDYKEHMKTEHPRPNKKGPVASPLVCEVCGDKFKSLCFFRAHKLKHTGERPYECSDCGKRFRHRYALCLHEKLHSRTGAHSFQCDMCQKLYGSKAGLERHIKVSKAPTCAVPRREDTLAHRRRCLPVDQKRYDTKAGLERNIKVSNAPACPCTRRYTRAPAPTRSSAKKLYDTKAGLERHIKVSNAPACPCTRRYTRAPAPTRSSAKKLYDTKAGLERHIKVSNAPACPCTRRYTRAPAPTRSSAKKLYDAKAGLERHIKVSNAPACPCTRRYTRAPAPTRSSAKKLYDTKAGLERHIKVSNAPACPCTRRYTRAPAPTRSSAKKLYDAKAGLERHIKVSNAPACPCTRRYTRAPAPTRSSAKKLYDTKAGLERHIKVSNAPACPCTRRYTRAPAPTRSSAKKRYDTKAGLERHIKVSNAHVPAREDTLVHRRRCLPVDQKLYGSKAGLERHIKVSKAPTCAVPRREDTLAHRRRCLPVDQKRYDTKAGLERHIKGHLGIRPFECSYCHKSFTFKYEVTMHINFVHLKKPWPKRIRTKRKAKEEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -