Aals014534.1
Basic Information
- Insect
- Agonopterix alstromeriana
- Gene Symbol
- -
- Assembly
- GCA_963924505.1
- Location
- OZ004677.1:1240442-1244689[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0011 0.071 14.1 0.4 1 23 289 311 289 311 0.97 2 12 7.2 4.6e+02 2.1 1.5 3 19 333 349 331 353 0.85 3 12 1.5e-05 0.00097 19.9 2.8 2 23 359 380 358 380 0.97 4 12 0.0024 0.15 13.0 0.3 1 23 384 407 384 407 0.95 5 12 0.54 35 5.6 0.2 1 23 410 432 410 432 0.94 6 12 9.3e-05 0.006 17.4 0.2 3 23 524 544 523 544 0.96 7 12 0.34 22 6.2 0.2 2 23 564 586 563 586 0.96 8 12 1.9e-06 0.00012 22.8 4.2 1 23 592 614 592 614 0.98 9 12 0.00061 0.039 14.9 2.5 1 23 619 641 619 641 0.98 10 12 0.00011 0.0074 17.2 1.6 2 23 648 670 647 670 0.94 11 12 7.3 4.7e+02 2.0 3.2 1 19 678 696 678 697 0.87 12 12 0.13 8.3 7.6 1.9 3 19 710 726 709 731 0.94
Sequence Information
- Coding Sequence
- atggATCAAGAAAATTTCATTATGGACTCGGAGATACTATATCCTATCCTGTTCATACCAAAAAAGTGTACGACATTGGAGACCAACTGCGAAGTATCTGACAAtgttttcattgacttgaaCATCACGTCTCCGGACACCGAAGGTAATGAGACTTGTATCTACTCAGGTTTCTGCAACATCAAGCTCGTAGACAACTATGATGTGAAAGTTCAACAGATGAACAATCCGCAGGACGTGGTCCCGGAGTACGATGATCAGATCCCCGTAATCATAGCCGATTCATCCCAAGCTTTACCTTACAACCAATCAGAAGTATGGATAGACCCTTCTAGAAGTCCGTTTGTATACAATCATTACAATGCAGAATCACAGGAACGCTTCTCAATATGCCACCAAACTCGTACCAGTCACATAACGGTAGAACAACACAACACTTATATAACTAAGAACGTTTATAACTACAAAGAGGCCGTCCACTATTCACCGCCGGAAGAATTTGAtcataaaaagttcagaaagtATCCAGAGACACAAAGTTACGAGGAGAATGAATTTGAATGCGGAGTATTTCTATCTCAGTTGCCGGAGGAGATAATGAATGAGAAGGAGATAAAGGCGAGAGAGGAGAGGAAGTTCGTGGGGCTTCAGAGCGAGAACGGGGCGTTGAAGCAGCTCATGTCATCGGATATCCAGTCGGTGTCTAAACAGAGGAAGACTATTCTGTTTCTTGGACATGACTCGCACTGCGGTCAGACGGTGCAGAAGATAGCTATTACGGATCCTATGGTGCAGTGTCCGAGACCTGAAGTGGATCACGAGGTGGTGATCGaggACAACGACCTGAAtccaaaacaaaagaaataccAATGCGCGAAATGCCAGCAAATATTTGATCAAATATCAGAATTCAGAGACCACATGGTTAACCACAGAACCAACAAATATTCCAAGTTTGGACCAAATTCTCGTCCAACCAGCGAAGTCAAATTCCTATGCATTGAATGCGGGAAAAACTTGAAGACTAGAGAAAAATTTGAGTTGCACTGCCTTGGACATGGAGACCCAGAGTTAGAATGCAACAAATGCCACAAAGTGTTCGCGTCGAAATTCACCTTGCGCGCTCACCGCAAAATCCACACAAGAAAATACCCATGTAGGTATTGTTCAAAAACCTACTCTAAAGTAGAAGATATGAGAGCTCATGTTGCGAAAATACACTTCACTTTCATGTGTAGCTCATGTGATTTTGTTGCGAACAAATTTTCAGATCTCACCGACCATGAGGTTGTACACGAAAACTTTTACGCGAAGGATTCTAGCGAGACTGATTTTGCTGAATCCTTCCTTGATGAAGTGATGAGTGAGAGCGATATAATCACGCCATCCCCTGAGGGGCACGACTGGAAATTAGAGCAGGACGATGGTGAGAAGCAGGATGAAGATATAGGGGTATATTCCAGTACTTATGAAGAGATTCAGAAAGCTGATTCGGTGTTGGCTAAAGTGATGTCTAATAAGATGTTCTTGGCCAAGAAGCCCAAGAGACATCGGAGATATAATAAGGCCTGCGACGTCTGCTACAAAACCTTCGACCGTGTCAGCGACCTAAAACGCCATCTGATCGAGCACGTGGTCCGCAGCACCCTCGCCAAGACCCCAGTCAACAAGAACGGCACCCTAAACATACAATGCGAGGTCTGCCAAGCGGAGACCTTCACAAAAATAGACAGGTACAAAGCACACCTCCGGGAACACGCCAAATTAACTCTCTACCAATGCACTTTCTGCAACAAATCCTTTAGCGACTCCAGCAACTtttcaaaacacaaaaaaatacatGGAGACACTTATTTCCAATGCGATTTGTGTCAAAGAAAATTCAACTCTAAGAAAATGATAACACAGCACATGGAATACCACAGTAAAAACACTCCGCTTACTTGTAGGTACTGCGATAAGGTATTCCATTTTGAATCGATGCTGAATAAACATATAAAAGGTGCTCATACTAGGGAGTTGACCAGTAGATTTCGTTGCAAATTCTGTCATAATTACTTCAAGACTTTGAAAGATAAATGGGACCACGAATGGTCGGTTCATAACGTTAGAAAGATGATTGTAGATTGTCTGATTTGCGGTTCAAAGTTTAGGAAATACGCAGAGTTGAAACGTCACTGTAGTGATGATCATAATATGGATATTCCGCCCGCAAAGAAGTTGTTGAAGAAGAAATCTCAGGCTGGGTCTAGTAGATACTGA
- Protein Sequence
- MDQENFIMDSEILYPILFIPKKCTTLETNCEVSDNVFIDLNITSPDTEGNETCIYSGFCNIKLVDNYDVKVQQMNNPQDVVPEYDDQIPVIIADSSQALPYNQSEVWIDPSRSPFVYNHYNAESQERFSICHQTRTSHITVEQHNTYITKNVYNYKEAVHYSPPEEFDHKKFRKYPETQSYEENEFECGVFLSQLPEEIMNEKEIKAREERKFVGLQSENGALKQLMSSDIQSVSKQRKTILFLGHDSHCGQTVQKIAITDPMVQCPRPEVDHEVVIEDNDLNPKQKKYQCAKCQQIFDQISEFRDHMVNHRTNKYSKFGPNSRPTSEVKFLCIECGKNLKTREKFELHCLGHGDPELECNKCHKVFASKFTLRAHRKIHTRKYPCRYCSKTYSKVEDMRAHVAKIHFTFMCSSCDFVANKFSDLTDHEVVHENFYAKDSSETDFAESFLDEVMSESDIITPSPEGHDWKLEQDDGEKQDEDIGVYSSTYEEIQKADSVLAKVMSNKMFLAKKPKRHRRYNKACDVCYKTFDRVSDLKRHLIEHVVRSTLAKTPVNKNGTLNIQCEVCQAETFTKIDRYKAHLREHAKLTLYQCTFCNKSFSDSSNFSKHKKIHGDTYFQCDLCQRKFNSKKMITQHMEYHSKNTPLTCRYCDKVFHFESMLNKHIKGAHTRELTSRFRCKFCHNYFKTLKDKWDHEWSVHNVRKMIVDCLICGSKFRKYAELKRHCSDDHNMDIPPAKKLLKKKSQAGSSRY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00028100;
- 90% Identity
- iTF_00028100;
- 80% Identity
- -