Aals010868.1
Basic Information
- Insect
- Agonopterix alstromeriana
- Gene Symbol
- topi
- Assembly
- GCA_963924505.1
- Location
- OZ004672.1:3112647-3124312[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00036 0.023 15.6 4.0 1 23 287 309 287 309 0.98 2 12 0.1 6.6 7.9 7.3 2 23 317 339 316 339 0.96 3 12 0.09 5.8 8.1 0.7 2 23 344 365 343 365 0.96 4 12 0.00022 0.014 16.3 1.0 1 23 370 393 370 393 0.98 5 12 0.0064 0.41 11.7 1.6 2 23 397 419 396 419 0.95 6 12 0.037 2.4 9.3 0.1 2 20 430 448 430 450 0.95 7 12 0.64 41 5.4 1.1 3 23 460 480 460 480 0.91 8 12 0.00026 0.017 16.0 1.1 3 23 500 521 499 521 0.97 9 12 1.9e-05 0.0012 19.6 0.9 1 23 540 562 540 562 0.98 10 12 0.00046 0.029 15.3 0.8 1 23 568 591 568 591 0.95 11 12 7.5e-05 0.0048 17.7 1.7 1 23 597 620 597 620 0.98 12 12 1.3e-05 0.00083 20.1 1.5 1 23 626 649 626 649 0.95
Sequence Information
- Coding Sequence
- ATGGAAGACGAAGATAagaaatattgtaaaatatgtTTAGTGACCGATTGCAAAATGTTTAGTTCGCCCTCAATAAGCGAAACATATTCACAACTTGTTCAAGTTGTCCTCTGTGATGATTACAAACTGTATGTCTGTTACCAGTGTGAATATCTATTGAGGAAGTGTCAAGAATTCAAATCCAAATGTATGATGGCTCTCAATGTGTTATCATCTATTAATATGGACCATTCCAAGATAACTAAAAGCATTGTCAGAGACATTGATAGGAATTACTATAAACTAGAATCAAAATTATGTCTTAGTTCCATTCTTGTATGCAATAGCAACAAACAAATTGTACTACCAGAACCCAATTTACACTCTGATGTTAAAATTGATATTGATATCAAGCCTGGTGCATTAAAAGTCGAAAAATCAGAAATTGAAGACATTGATGCTGGAGACCCTTTGTCTGACGAAGAAATTTTGCCTGAAACAAAGCCTTACATAGAACCTTTGCCTGACATGGTAACTGTCACCGCTGAAGAATCCTCGCCTGGCATAGAATCTCAAGCCACAGATTATCTGAATGATTTTAACAAAGCACAAAATAATATGAAAGCAGAAATAAAGCTGGATAACAAATGTTTACCAAAATCAAAGAACACTGAAGATAACGTgcccaaaaaaaagaaaatattgatcCGTAGAATAAGAAAACGGAAAGCAGATAAGCCTAGTAATTTAATAGATAAAAAACCTAATAAgatcattgaaataataaaaaattatacaaaaatagaTGAGATGACCCCATCAGAAGCTCAGAATGAAATCCTTATGAAAAAGCAATCGAAAAATTACAAGACTAGTCTACACAAGTGTGATTTATGCTACAAAGGTTTTAACATGAAATCTACATACAATAATCACATGAAGATACATAGCCCGgATTCAGGAACCAAAGAATGTAATTTCTGTCACCGACGTTTTCCTAGAATGTGCGAATTGAGTACCCACATTGAAACATGtcacaaatataaaataacttgCAATTTTTGTCCATATGTTTGCTTCAGGACGGGCCAAGCTAAAAATCATATTGCTATTCATAAAGGCGAGACTTACACATGCGAACAGTGTGGAATGAGTTTCCGatttATAAATACCCTAGCGAATCACAAACGGATAAAGCATGCAGAGTGCGTGTGCGCACATTGCGGCAGCATGTTCGCCAATCTAGTAGGCCTGAAGGCACACAAGAATAGAACACATAAACAGgATAGTGTAGAGCTGCTGGGACCTAAGTGTGAGGAGTGTAATGTTCAGTTCGCGACAGAAACCGCGTGGAAGCGACATCTGGTGCTCTCTTCTAAACATACTGTGAGTAACGGGTGTGAGGAATGTGGTGAAACTTTCCTTACTGCAAAAGACCTGAGATGTCACGCGAAGGAGCACCCTCAGAGGCTGGCTATTAAAGCACGTTTAATTAAACAGAGGTGCACACCAGCCGATTGTGAGCACTGCGACAAAAGGCTGGAAAACAACGCTGAGTACGAAAAACATATGAAGTCAGAGCATCCAAATACTAAAGATGCCATGAACATCGTAAAAGCTGAGGAAGAGAATACGCAGTACATCTGTGAAGTGTGTGGGAAAGTGTTCAAGTATTACGTATTACTAAAATACCACACAAACAAGCACACGGGCGAACGTCCGTTCCAGTGTGACCAGTGCGACAAGAAGTATACCCAGCCGGGTCCCCTGTACCAACACAAAGTCACCTACCACTCCGGCGCACCTAAATTCAAATGCGATGTCTGTCAGAAGACCTTTCACCTCAAAGGTCCATTAATAAAACATATGAAGATGgtgCATCTCGGTATCCGTAGATTtcaatgtaagatttgtaataaACCATTCAGACATCCGTATGAAGTGAAACTGCATATGGATTATGTACACTTCAAAAAACCTTGGCCGAAACGAGATAGAACTAAACAGAAGAATAAAGAAGATAAAGTTAATGTCGAATATTTAGATTCGAGTGTTTTTGGGAAGGAAGAATTCTag
- Protein Sequence
- MEDEDKKYCKICLVTDCKMFSSPSISETYSQLVQVVLCDDYKLYVCYQCEYLLRKCQEFKSKCMMALNVLSSINMDHSKITKSIVRDIDRNYYKLESKLCLSSILVCNSNKQIVLPEPNLHSDVKIDIDIKPGALKVEKSEIEDIDAGDPLSDEEILPETKPYIEPLPDMVTVTAEESSPGIESQATDYLNDFNKAQNNMKAEIKLDNKCLPKSKNTEDNVPKKKKILIRRIRKRKADKPSNLIDKKPNKIIEIIKNYTKIDEMTPSEAQNEILMKKQSKNYKTSLHKCDLCYKGFNMKSTYNNHMKIHSPDSGTKECNFCHRRFPRMCELSTHIETCHKYKITCNFCPYVCFRTGQAKNHIAIHKGETYTCEQCGMSFRFINTLANHKRIKHAECVCAHCGSMFANLVGLKAHKNRTHKQDSVELLGPKCEECNVQFATETAWKRHLVLSSKHTVSNGCEECGETFLTAKDLRCHAKEHPQRLAIKARLIKQRCTPADCEHCDKRLENNAEYEKHMKSEHPNTKDAMNIVKAEEENTQYICEVCGKVFKYYVLLKYHTNKHTGERPFQCDQCDKKYTQPGPLYQHKVTYHSGAPKFKCDVCQKTFHLKGPLIKHMKMVHLGIRRFQCKICNKPFRHPYEVKLHMDYVHFKKPWPKRDRTKQKNKEDKVNVEYLDSSVFGKEEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -