Aals021458.3
Basic Information
- Insect
- Agonopterix alstromeriana
- Gene Symbol
- -
- Assembly
- GCA_963924505.1
- Location
- OZ004688.1:4032693-4046904[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.1 1.4e+02 3.7 0.6 1 23 238 261 238 261 0.89 2 15 6.4 4.2e+02 2.2 0.2 8 23 274 289 268 289 0.76 3 15 0.53 34 5.6 2.0 1 23 293 316 293 316 0.95 4 15 0.00013 0.0087 16.9 0.9 1 23 359 382 359 382 0.97 5 15 0.002 0.13 13.2 0.2 1 19 386 404 386 406 0.95 6 15 1.6 1e+02 4.1 0.0 1 13 421 433 421 441 0.73 7 15 1.6 1e+02 4.1 0.0 1 13 456 468 456 476 0.73 8 15 0.0029 0.19 12.7 0.1 1 20 491 510 491 512 0.93 9 15 1.5e-05 0.00099 19.9 0.6 1 23 566 588 566 588 0.98 10 15 2 1.3e+02 3.8 3.2 2 23 596 616 595 616 0.96 11 15 0.00029 0.019 15.9 1.5 1 21 622 642 622 647 0.94 12 15 4e-05 0.0026 18.6 0.9 1 23 655 678 655 678 0.96 13 15 0.0015 0.1 13.6 2.4 1 23 684 707 684 707 0.97 14 15 8.3e-06 0.00053 20.7 0.4 3 23 719 739 718 739 0.96 15 15 0.001 0.064 14.2 3.9 2 23 746 768 745 768 0.96
Sequence Information
- Coding Sequence
- ATGGACGACGGTCAAGCGATAGAAATGAAAAAGATATGTTGCACTTGCCTCAGTCGGGATCGCAAGTTGTATCAACTTTGCAGGCTTACGAACGGCGTAAACAACTTATATTTACTACTCTCTTTCGACTCTGAAGCATACCGAGAAGGCTTCTACAAAGACGCAGCAAACTTGTTCATATGCTGGGAGTGTCGCGCCGTCATGTGCAGGATCTCGAAGTTCAGAGAGCAGGCGTGTGTCGTCCAGAAACAGCTGTCTAATATACAAGATGGACGCACTGATGTGCAATATATCTACGTGTGCCACTCAAGTCTCTCCTGTTCTAATACGATTACGTTCAACAAAACATTTGTACCGGAAACTAATGATAAATTAACCGACAACTTCATTGACTGCGGCCCCGTGGTTGACGCCATCAAGTCTGAAGATGAGGAGGATCTACCGCTTTCTGAGTTACATACCGGGGCTCTTCCGCCTGactcaccctgtatatccgacAATAACTTTGACGAAGAAAAAACACATTTAGAAAACTTAGAACCAAAAATAGAACATAAAGAAAAACCTAAAAGAAGAATGCGGAAGCCAAAGAAGAAGTACCTCTCTGAAGACGAACAGAAGAAATATTTTACAACAACACTGATGAGTGAGCAGGAAATGTATGAGAGTAGAGAGAGAAGGAAGATGTTGTCGTCTTACTCCGACGCTTCACACAAATGTGAGTCTTGTTTGGAAGGGTTTAGGAACGTTATCGATTGGCAGAATCATAATTTGTATGAACATACTGAGACAGCCAACCACACGCAATGCGATGTCTGCCTCACCTACATAAGGAAGCCATTGTTACAAGCTCACAAAATCAGCCACTATCACAGACACGACTGTCAGTTCTGCGACTATATCTCGTACACGCTTGATGATATACTGAAACATTTGAAGAGGAGGCACGCCATACAGAACTTAGCTGTTAAGGTTGAAAAGAAACGGAGTGAAAAGAAAAGTGCAATAGTAAAGAAACCGGGCTCGAAGCCAAGAATGAACGTGCCTCTTAGGGACAAAAGGACGCCCTTCGGCTACCAGTGTCCCGAGTGCAGTAAATATTTTGAAGATAAGAAGCAGCGTTGGAAGCACATCCAGCAGGCGCATAGAGAGGGTTTCAAATGCAGCACGTGCGGCAAGGCGTTCGCCTTCAGAAATGTTCTGGCGAGGCACGAACTAGATAAGCAGCGTTGGAAGCACATACAGCAGCACAGGGAGCAGTTCAAATGCGGCACGTGCGGCAAGGCGATCCCCTTTATAAACGTTCTGGCGAGGCACGAACTAGATAAGCAGCGTTGGAATCACATGCAGCAGCACAGGGAGCAGTTCAAATGCGGCACGTGCGGCAAGGCGATCCCCTTTATAAACGTTCTGGCGAGGCACGAACTAGATAAGCAGCGTTGGAATCACATGCAGCAGCACAGGGAGCAGTTCAAATGCGGCACGTGCGGCAAGGCGTTCGCCTTCAGAAATGTTCTGGCGAGGCACGAACTCAGCACAGGGAGCAGTTCAAATGCGGCACGTGCGGCAAGGCGTTCCCCTTTAGAAACGTTCTGGCGAGGCACGAACAGTAAGTATTATTATAAGACTATAGTAGAACCGACTGCTCGTAGAGATAAGCAGTGTTGGAATCACATGCAGCAGCACAGGGAGCAGTTCAAATGCAGCACGTGCGGCAAGGCGTTCGCCTTCAGAAACGATCTGGCGAGGCACGAACTACGCCACGTGACACCGGCGCCTCGTACGGAATGCGCGACGTGCCACAAGATGATCAGACACGAGCTGATGAAGGTGCACCAGCGCATACACTCGGCGCGCGAGACGTTCACCTGCGTGGAGTGCGACAAGCGGTTCATCAGCCAAGCTTCCTACGAACACCACCTTAAGTACACGCGCGCGCACGCCGCCATCGATATACACAAATTCAAATGCACGATGTGCGACAAGGGATATAGATCCCGCGGTGAACTAAGAGACCATGTCAACTACCAGCATATGGGGAAAACGCAGCACAAGTGCCCCATCTGTGACAAGGCTCTGGCGACCCGCCGGTGTATAACGCGGCACGTGAAGCGAGCTCACAACGGCGTCAAAGAGAACGCCAAGGATAAGATATGCCAGCAGTGTGGCAAAGCGTTCAGGGACAAGAAGAATCTCCGTGAGCACGAGTTGATCCACACGGGGGAGCGGCCGCTGTCGTGCGAGGTATGCGGCTGCACGTTCAGGCAGCACGCGTCTCTCTACACGCACAGGAAGCGCGTGCACAAGATATGCCCGGCCAGGAAGCTCGTGCGGCTCGTCACCGACGCTGACAACACCTACATTGCCACTGAACCTAattag
- Protein Sequence
- MDDGQAIEMKKICCTCLSRDRKLYQLCRLTNGVNNLYLLLSFDSEAYREGFYKDAANLFICWECRAVMCRISKFREQACVVQKQLSNIQDGRTDVQYIYVCHSSLSCSNTITFNKTFVPETNDKLTDNFIDCGPVVDAIKSEDEEDLPLSELHTGALPPDSPCISDNNFDEEKTHLENLEPKIEHKEKPKRRMRKPKKKYLSEDEQKKYFTTTLMSEQEMYESRERRKMLSSYSDASHKCESCLEGFRNVIDWQNHNLYEHTETANHTQCDVCLTYIRKPLLQAHKISHYHRHDCQFCDYISYTLDDILKHLKRRHAIQNLAVKVEKKRSEKKSAIVKKPGSKPRMNVPLRDKRTPFGYQCPECSKYFEDKKQRWKHIQQAHREGFKCSTCGKAFAFRNVLARHELDKQRWKHIQQHREQFKCGTCGKAIPFINVLARHELDKQRWNHMQQHREQFKCGTCGKAIPFINVLARHELDKQRWNHMQQHREQFKCGTCGKAFAFRNVLARHELSTGSSSNAARAARRSPLETFWRGTNSKYYYKTIVEPTARRDKQCWNHMQQHREQFKCSTCGKAFAFRNDLARHELRHVTPAPRTECATCHKMIRHELMKVHQRIHSARETFTCVECDKRFISQASYEHHLKYTRAHAAIDIHKFKCTMCDKGYRSRGELRDHVNYQHMGKTQHKCPICDKALATRRCITRHVKRAHNGVKENAKDKICQQCGKAFRDKKNLREHELIHTGERPLSCEVCGCTFRQHASLYTHRKRVHKICPARKLVRLVTDADNTYIATEPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -