Aals020419.1
Basic Information
- Insect
- Agonopterix alstromeriana
- Gene Symbol
- -
- Assembly
- GCA_963924505.1
- Location
- OZ004686.1:3713750-3715555[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.1e-06 0.0002 22.1 0.2 2 23 117 138 116 138 0.95 2 11 0.00036 0.023 15.6 1.2 2 23 216 238 215 238 0.95 3 11 0.00043 0.028 15.4 1.0 1 23 242 264 242 264 0.98 4 11 0.22 14 6.8 0.4 2 23 286 308 285 308 0.94 5 11 0.0029 0.19 12.8 1.7 1 23 312 335 312 335 0.98 6 11 2.2 1.4e+02 3.7 0.1 2 23 358 380 357 380 0.89 7 11 9.1e-06 0.00059 20.6 2.7 1 23 390 412 390 413 0.96 8 11 0.002 0.13 13.3 1.5 2 23 429 450 428 450 0.96 9 11 0.0043 0.28 12.2 0.3 1 23 456 478 456 478 0.96 10 11 0.48 31 5.8 3.0 1 22 484 505 484 508 0.90 11 11 0.0015 0.098 13.6 0.6 3 23 564 584 562 584 0.96
Sequence Information
- Coding Sequence
- ATGGAACCCGAGCCAGACGTACATTTGACACCAATAGCAAGTACGAATAGTTCGATAGTTCCTTCTGGAGAAATTATCAGTCCAGCTCCCGAAATGTTTGCCACAAGAAAAGGTCGGGGTCGaataaaaactgaacaatcCACTGTCACAAATGAACATGAAAACAGAATGAACACAGAACCGTTTCGACCAAATTCTGGGAACGAAGCGTCTTTTAGTAAAGAAGAATTAGAATCATTTCAATTAAATTCTATAACGGGCAATGTTTTATCGTTAGAACAAGAAGCTTACGGTTTACTCAAAGCCAATCCAAAAGCTAAAAGGAAACCCAGAGCTCCTGCATTACTCAAATGTCCTGAATGCCCAAAATCTTACTCCACAAGAGGAAGTCTCAAAACACATTTAGGCGTACACAGAACAATAGAAAGACGTGCCATGGGTGTTCTCCGAGGACTACAAACTAGAAAAGAGAATCTTAAGAAGAAGTTAAAAAACGGAGAACATCACGACCAagatgcaaaaataaaaacaaatgcgAAAAAAGAGGGTTACGAATGTACGTGTGGACAAATATTTCAACGGAGAAGCAGAATGGAAACGTGTTTGCGGTCACACAACTTGTTTGAGTCACATACCAATTGTGTTTCATGCATGACGTGCACAAAACAGTTTACAAACAAAGACGAACTGGCTTTACACCGGAAGCGATTACATCGCAAAAGATTTCCATGTAAATTCTGCCCGACCGATTATGATACTCGGAAGGAGCTGTTCAAACATCTGCAGATACACCAAAAGGTACAACTTACTGAATACAAAGTTATTTCTGAAGTAATGAAGAGTAAACAGAAACTGCGATGTTTTCTATGCTCAAAGACTTGGACCGAGTTATCGGAATTAAAAATCCATGTCATGAATAACCACAAAGGTCCATACACCTGTCCACATTGTAAGAATACGTTTCCAAAAATAGTAGATTTTGGGAATCACATCAAAACCTATCATCCTGAAGTCGAAGGGCAATCAGTTTTGGATGTCCTGGAAGCTTTCTCACGATTAGTTCAATCTTGGAAATGTGAGGAATGCGAGCTACAGTTTTTAGAAGCCGATAAGTTAGCGATGCATCAAATAGAAAAACACAGCCCTGATATCAAAACAGAGTCACAATTCCAATGCTCCGATTGTCGGAGAGTATTCATAAGTCAGAAAGGGTTGACCTCACATAGGCGTATCCATCACAGCACTGAGACTACCGAAGAAGCTAAAGAGGAAGAAAAAGGAATAATGTGTCTGGAATGTCGTAAGATGTGCAAGGATATCACCGCCTTAACCTCACACATGCGATTACATTCGCCTGAACGAAAATATCCGTGCAAATTCTGTGATTTTCGATTCGCAACACCAGAAAAAAGGAAAGCTCACGCAGAAATTCATACCGGCGACATGAAATACGTGTGTTTTATATGCGAATATCAATGTAGTTCAGAAAATAGGTTAAAACAACACAAATTATCTTTAAAACATGCTAATATTAAAGAGTACCTTTTAACAGGAAAACCTCTATTAGAAGAAGAATCAACGTCTAAAGAGAAGGTAAAAAAGAAGGAAGATGTtaaaaagagaaagaaagaTAAAGCTCAAGAGAAGGAAAAGGATAAGGCTAGTAATAGTACTAAATTAGAAATATGCTGTGACGTATGTGGTGAAAAGTTTGGAGATGAAAGTCAAATGTTGGAGCATAAGCAGACGCATCCTTTTATAGAGATTTTCAATGATGATAAACCGAGTAGGATATTCTTTAAGTAG
- Protein Sequence
- MEPEPDVHLTPIASTNSSIVPSGEIISPAPEMFATRKGRGRIKTEQSTVTNEHENRMNTEPFRPNSGNEASFSKEELESFQLNSITGNVLSLEQEAYGLLKANPKAKRKPRAPALLKCPECPKSYSTRGSLKTHLGVHRTIERRAMGVLRGLQTRKENLKKKLKNGEHHDQDAKIKTNAKKEGYECTCGQIFQRRSRMETCLRSHNLFESHTNCVSCMTCTKQFTNKDELALHRKRLHRKRFPCKFCPTDYDTRKELFKHLQIHQKVQLTEYKVISEVMKSKQKLRCFLCSKTWTELSELKIHVMNNHKGPYTCPHCKNTFPKIVDFGNHIKTYHPEVEGQSVLDVLEAFSRLVQSWKCEECELQFLEADKLAMHQIEKHSPDIKTESQFQCSDCRRVFISQKGLTSHRRIHHSTETTEEAKEEEKGIMCLECRKMCKDITALTSHMRLHSPERKYPCKFCDFRFATPEKRKAHAEIHTGDMKYVCFICEYQCSSENRLKQHKLSLKHANIKEYLLTGKPLLEEESTSKEKVKKKEDVKKRKKDKAQEKEKDKASNSTKLEICCDVCGEKFGDESQMLEHKQTHPFIEIFNDDKPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00028099;
- 90% Identity
- iTF_00028099;
- 80% Identity
- -