Basic Information

Insect: Agonopterix alstromeriana
Gene Symbol: -
Assembly: GCA_963924505.1
Location: OZ004690.1:2023897-2034369[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.028 1.8 9.6 2.8 1 23 375 397 375 397 0.96

2 9 2.9e-07 1.9e-05 25.3 2.9 1 23 443 466 443 466 0.98

3 9 0.0075 0.49 11.4 0.0 2 23 472 493 472 493 0.97

4 9 7.7e-06 0.0005 20.9 2.1 1 23 499 521 499 521 0.98

5 9 9.8e-05 0.0063 17.4 0.3 2 23 527 548 526 548 0.96

6 9 6.4e-05 0.0041 17.9 0.4 1 23 557 579 557 579 0.99

7 9 4.2e-06 0.00027 21.7 0.8 1 23 585 608 585 608 0.94

8 9 0.59 38 5.5 1.9 1 13 614 626 614 637 0.86

9 9 0.066 4.2 8.5 3.1 1 23 645 668 645 668 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.028	1.8	9.6	2.8	1	23	375	397	375	397	0.96
2	9	2.9e-07	1.9e-05	25.3	2.9	1	23	443	466	443	466	0.98
3	9	0.0075	0.49	11.4	0.0	2	23	472	493	472	493	0.97
4	9	7.7e-06	0.0005	20.9	2.1	1	23	499	521	499	521	0.98
5	9	9.8e-05	0.0063	17.4	0.3	2	23	527	548	526	548	0.96
6	9	6.4e-05	0.0041	17.9	0.4	1	23	557	579	557	579	0.99
7	9	4.2e-06	0.00027	21.7	0.8	1	23	585	608	585	608	0.94
8	9	0.59	38	5.5	1.9	1	13	614	626	614	637	0.86
9	9	0.066	4.2	8.5	3.1	1	23	645	668	645	668	0.95

Sequence Information

Coding Sequence: ATGTTGCATAACAATGGGCCTTACGGGCCGAATGATGCCCCAATGAATGTGGGGACACCAGTAAACATGAAGCAAATGAATATCAACTCTAACTTAAATAATTTGGGTAAAATAGCTCAACAGCCTGCTCAAACGTCGAGTACACATTACAATCTACCGAATTACACCAATTTTGGTCATCCGCAGTTAAGTTTGAACCCGCAAATGACTCCATTTTCCAACTACCAACCAGTAGGATTCCAATCAACTTATTTACCTCAGAATATTTCATCTGCTCACGAAAATAACTGGCAAAACGGTATGTTACCCATGAATTTGAATATACAGAACACCCACGATCATAATACACTGAATTATCcaacaacttttaataaaataccacCAGATTTGGCTGCTGAAAATTACAAAGAagataacataacaaaaaaaatgattCCTCTAAATATACCAGAAGTTCCGATAAAATCATTCCAAAAATTAGATAATGATAATGGAAATTACAGCCCTTATAATGTAAATAAGGATAAATATAATTACGTAAATTATAATTTGGATTTGAACTCCAAAAACGAGAAACCACTTTTAGATAATACAAGAAGAAAAAGTCTAGAAAATACAGTAAGATTAATAGAAAACATACTTATTAATACGACAAAAAACAAGGATTTACAAAGGATTCAGGAACTCAACAAAATTACTGAAACAAACTCGAATAAGACGGAAACTAAAATTACTGAACAAAATATGACTCCAGAAAAATTAATAAACGAACAAAACGTTAACGAAAACTCAAGTAACGATACAAACAATACTACCAACAAGAAGGAAATCTCAAAAACCGATGATGAAGATATGATGACGGAAACGGAAAATTCTTCATCAGAATCCGAAGAAGATGTGAAACCGTCGAtagaagaattaaaaataaaaattgaaattgaCACAAACGTCGATGTTAAGGTAGAGAGTGTGTGTTGGACCGACACAGACTTTATAAACCCTTTTCATAGAGATGTAAATGCAACAGTAAGAGATGATGTCGGTGGTGACATCGTTGATTGTGAGAATAGCGTTAACGAAGCAACGGCAGTTATCAAAAGTGGCACAAAAACAGACAGCCACTACGAATGTCCTCACTGTAACATCCTCTTCAGCCATCCAAAAAGGTTCCTAATACACAACAAATGGCACACGTTCGGTCTTACGAACGAGAAACGTATGGAAATAGCGAGGGAGCGGGAAATACTCAGGAACCAGAGGAAGGAAGCTCGCGTCGTGGACCGGATGAACTCTATGGAGGTGACCGATGCGGCCGGGCAGAAGGTTTATCAGTGTAAGGATTGCGAGAAGGCTTTCAGTTCGAAGAGCAGTCTGAAGAACCATAGGCAGAGATACCACCCAACCCGTGTCCGGGAATGCAAGATCTGTCGCAAGACTGTCGTCGGCTGGATCGCGCTGAGAGCCCACCTCGCCTCCCACACACACGAGGCCGGCTACCAGTGCGCAGACTGTCCCAAGAAGTTCAAATACGCACACTCTCTCGCCAAACATAGAGACACGCATCTTGAAAAAACGTTATCATGCGAGCAATGCCCCAAGATGTTCGGATCAACAGCCCAGCTGAAGATGCACCAGAAAGTACACGAGCGAGCGCAGCGCGGCACAACCTTCAGATGCAGTTACTGCGCTAAAGGATTCTACGAGGCCTACAATTTAGCTGTGCACGAAAGAACTCATAGAAATGAAAGGCCGTTTCTATGTGACATCTGTAATACTAGCTTTGGAACCAATTCAAGTCTGAAGAGGCACTTGAAAGTGTCCCACAGTACGTCAAAGCCGTACGAATGCAGTACCTGCAAGCGTTCGTTCGTGTCCGCCGTCATACGGGACCGGCACGAGCTACGGCAGCACGGCGATCCGGCGCTGTTCAACTTTACCTGCGATATGTGTGAATGCAGGTACATGAAACTCAAGGATCTGCAGAAGCACGTTTACAAGGCGCATCCGAAAGGCAAGAGAAAGAAGAAACAACAGAGTGATAGTGAGTGA
Protein Sequence: MLHNNGPYGPNDAPMNVGTPVNMKQMNINSNLNNLGKIAQQPAQTSSTHYNLPNYTNFGHPQLSLNPQMTPFSNYQPVGFQSTYLPQNISSAHENNWQNGMLPMNLNIQNTHDHNTLNYPTTFNKIPPDLAAENYKEDNITKKMIPLNIPEVPIKSFQKLDNDNGNYSPYNVNKDKYNYVNYNLDLNSKNEKPLLDNTRRKSLENTVRLIENILINTTKNKDLQRIQELNKITETNSNKTETKITEQNMTPEKLINEQNVNENSSNDTNNTTNKKEISKTDDEDMMTETENSSSESEEDVKPSIEELKIKIEIDTNVDVKVESVCWTDTDFINPFHRDVNATVRDDVGGDIVDCENSVNEATAVIKSGTKTDSHYECPHCNILFSHPKRFLIHNKWHTFGLTNEKRMEIAREREILRNQRKEARVVDRMNSMEVTDAAGQKVYQCKDCEKAFSSKSSLKNHRQRYHPTRVRECKICRKTVVGWIALRAHLASHTHEAGYQCADCPKKFKYAHSLAKHRDTHLEKTLSCEQCPKMFGSTAQLKMHQKVHERAQRGTTFRCSYCAKGFYEAYNLAVHERTHRNERPFLCDICNTSFGTNSSLKRHLKVSHSTSKPYECSTCKRSFVSAVIRDRHELRQHGDPALFNFTCDMCECRYMKLKDLQKHVYKAHPKGKRKKKQQSDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00028061;
90% Identity: iTF_00028061;
80% Identity: -