Aals010996.1
Basic Information
- Insect
- Agonopterix alstromeriana
- Gene Symbol
- GIP
- Assembly
- GCA_963924505.1
- Location
- OZ004672.1:7853494-7861628[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.058 3.7 8.7 2.3 1 23 148 170 148 170 0.98 2 12 0.71 46 5.2 2.7 2 23 178 200 177 200 0.93 3 12 0.009 0.58 11.2 1.1 1 23 204 226 204 226 0.97 4 12 0.00046 0.029 15.3 2.3 1 23 231 254 231 255 0.96 5 12 0.1 6.5 7.9 0.4 2 23 259 281 258 281 0.91 6 12 0.096 6.2 8.0 0.0 2 20 292 310 292 312 0.95 7 12 8.3e-06 0.00053 20.8 0.3 2 23 321 342 321 342 0.96 8 12 0.095 6.1 8.0 1.2 2 23 351 373 350 373 0.95 9 12 7.1e-05 0.0045 17.8 3.9 1 23 390 412 390 412 0.98 10 12 0.00043 0.028 15.4 0.3 1 23 418 440 418 440 0.98 11 12 5.5e-05 0.0036 18.2 1.7 1 23 446 469 446 469 0.96 12 12 1e-05 0.00068 20.4 3.4 1 23 475 498 475 498 0.97
Sequence Information
- Coding Sequence
- ATGTTCAGCATGAACACACCTTCCATTCTTGAAGCTTATTCACAACTTATTCATTTTAAGATCTGTGAAGATTATCAAGCATATGCTTGTTACGAGTGTGCCAGTTTACTGCACAAATATCAAGAATTCCTTACTAAGTGCTTGACAGCTCAGAATGTGCTGTCTTCTATCCATATTGACCACTCCAAGGAACAAAATGATTCAAGTGACTGTAGCGACGAGCCTTTGGCAAAGAGATTAAAAACTAAGAGAAAACGAAGGGAAAATGTTCCTAAAAATTCTTTGAAGAAAGCAGTATGTGGGGCAGTTAAAAAAAAGGATAGTCCCAAATTTGATGCAAATTCCTTTAAAGATTATGCAACAGTAGTGGTCCTTACACCAGAAGATGCTAAGAAAGAAGTTCTTCTAAGGAAAGAATCAAATAATTATAAGGTTAGTCCACACAAATGTGGTCTTTGCTACAGAGGATATGAATTCAAAGCAGCATTTGATAATCATATGAAGAAACATAGCCCCGAGTATGGAAGTTTGGAATGTGCGTCATGCCATCTAAAGTTCCCTGAAAAgaaatttttatacaaacacCAATTTTCATCACACAAGTACAAGTTTATCTGTAAGATCTGCCCATATGTATGCTATTATACTTATCAAGCAAAAGCACACATGAATGCTCACAAAGGAAAGAAGTATCCATGCAACATATGTGGAGAAATGTTCAGCTTAACAAAAACTCTGTCGAAGCACAGGCTCAAGAAGCATCATGCGGAATGCGTGTGCGCTTTGTGCGGCGCTGTGTTCTCTACCCTTCAAGATATGGACACACACAAGACTGTTTCCCATATACAGGAAAATAATGAACTGCTTGGTCCTAAATGTGCGGAGTGTGATGTTCAGTTCGCGACAGAAACCGCGTGGAAGCGACATCTGGTGCTCTCCTCTAAACATACCGTAAGGAACGTATGCGAATATTGTGGTGAAACATTCTCCGACGAGAAATCCTTAAAAAATCATGTTAAATTACATTCTGAGAAACggccaaataaaaaatattgtaacattTGCGACAAATGGCTAAAAAACCGCAATGAGTACAAAACCCATATTACATCACAACACCCTCTTTCCGAGGCAGCTAAGAAGATAGAGGCTGACGAAGAAAAGAAATTCGTTTGTGAAGAGTGCGGGATGGCTTTCAAGAAAAAATGCTTTCTTCGCTACCACCAACGAACACACAGCAGCGAACGTCCCTATGAGTGTCGCGTGTGTGGTAAGAAGTTCAGGCTGCCGGGTGTCCTGTACCAACATGAAAACACTCACACGCGCCGACGTGTGTTCCAGTGCGATATGTGCCACAAAGAGTACAACACCAAGAATGCTCTCGTTAAACATATTAAGGCTAATCATCTCAGAATCCGTCCATACAAATGTTCGTATTGTGATAAATCATTTGTTCACGAGTATGAAATGAAGACGCATATTAAATACGTGCACTACAAAGTGCCGTGGCCGAAGCGAGACAGAACTAAAAGAACGGCAAAAGAAGATAGTAATgctttatttaaAAAGCTCAAAGAAGTAAACGACCTGCTAAATGcaaaatttgaattaaaagaCTTAGGGATACCGAAACGGCTACTTGGAATAGACGTTACCTATAAGAGGGGTGAAATTAAACTGAACCAAGAAAAGTTCATAGAAGACACtctcaaaaagttcaagatggaaGATTGTAAAGCAACGACTACACCAATAGAGCCAGGTCTCATGCTTGAAAAGGGTAAAAGAGATGAAAGGAAAGATCTTCCCTATAAAAACTTAATCGGTACGCTTATGTACCTGGCAGTGGCAACTCGCCCTGACATAATGTTTGCCGTAAGTTATCTCTCGCAATTTAACGATTGTTACGGAGAAGAGCATTATAAGTGTGCAAAAAGAGTACTACGTTACCTTAAAGGAACGAAGAGCACCGGTCTCACCTTCAAGAAGACCGGGCGAAAATTGCTTGGTATGGCAGATGCAGATTGGGGCGCATGCAAGCTTGATCGAAAGTCTTTTTCGGGCTATTGCTTTATATATGCTGGAACGTCCGTAAGCTGGATGTCCAAAAAGCAACGAAGCGTTGCCCTATCGACAGCTGAGGCGGAGTACGTTGCCCTAACCGAAGCTGCGAAAGAAGCCATCCATCTAAAGAGCCTTTATAAAGACCTAGGGGCCAGCTATGACAACATAGTCGTATTAAATGACAACCAAGCTGCCCTCAAACTTAGTCAAAATGCGATGGTGACTTCGAAATCTAAACACATAGACCTAAAAATGCACTTCATTCGGAACTGCATACAAGAAGGGCTAATAGATGTCAAGTATCTGCGAACAGAAGACATGGGAGCAGATATGCTGACAAAGGCTTTAGCTGGACCGCGGCTGATGAAATTGCGGTGCAGCTTAGGACTCTCCTGA
- Protein Sequence
- MFSMNTPSILEAYSQLIHFKICEDYQAYACYECASLLHKYQEFLTKCLTAQNVLSSIHIDHSKEQNDSSDCSDEPLAKRLKTKRKRRENVPKNSLKKAVCGAVKKKDSPKFDANSFKDYATVVVLTPEDAKKEVLLRKESNNYKVSPHKCGLCYRGYEFKAAFDNHMKKHSPEYGSLECASCHLKFPEKKFLYKHQFSSHKYKFICKICPYVCYYTYQAKAHMNAHKGKKYPCNICGEMFSLTKTLSKHRLKKHHAECVCALCGAVFSTLQDMDTHKTVSHIQENNELLGPKCAECDVQFATETAWKRHLVLSSKHTVRNVCEYCGETFSDEKSLKNHVKLHSEKRPNKKYCNICDKWLKNRNEYKTHITSQHPLSEAAKKIEADEEKKFVCEECGMAFKKKCFLRYHQRTHSSERPYECRVCGKKFRLPGVLYQHENTHTRRRVFQCDMCHKEYNTKNALVKHIKANHLRIRPYKCSYCDKSFVHEYEMKTHIKYVHYKVPWPKRDRTKRTAKEDSNALFKKLKEVNDLLNAKFELKDLGIPKRLLGIDVTYKRGEIKLNQEKFIEDTLKKFKMEDCKATTTPIEPGLMLEKGKRDERKDLPYKNLIGTLMYLAVATRPDIMFAVSYLSQFNDCYGEEHYKCAKRVLRYLKGTKSTGLTFKKTGRKLLGMADADWGACKLDRKSFSGYCFIYAGTSVSWMSKKQRSVALSTAEAEYVALTEAAKEAIHLKSLYKDLGASYDNIVVLNDNQAALKLSQNAMVTSKSKHIDLKMHFIRNCIQEGLIDVKYLRTEDMGADMLTKALAGPRLMKLRCSLGLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -