Basic Information

Insect: Agonopterix alstromeriana
Gene Symbol: -
Assembly: GCA_963924505.1
Location: OZ004687.1:498331-501594[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.1 70 4.6 0.6 1 23 18 40 18 40 0.93

2 13 0.094 6.1 8.0 3.4 2 19 47 64 47 68 0.83

3 13 0.0046 0.29 12.1 0.1 3 21 76 94 75 95 0.93

4 13 0.25 16 6.7 0.0 3 23 128 149 126 149 0.94

5 13 5.3 3.4e+02 2.5 0.6 2 23 156 177 155 177 0.91

6 13 0.0033 0.21 12.6 2.8 3 23 185 205 183 205 0.94

7 13 0.00059 0.038 14.9 0.4 2 22 212 232 211 232 0.94

8 13 0.016 1 10.4 0.2 2 23 248 269 247 269 0.97

9 13 9.8e-07 6.3e-05 23.7 1.4 1 23 276 298 276 298 0.99

10 13 0.00077 0.05 14.6 1.3 3 23 306 326 305 326 0.97

11 13 7e-05 0.0045 17.8 0.4 1 23 332 354 332 354 0.97

12 13 0.00015 0.0099 16.8 3.6 1 23 360 382 360 382 0.94

13 13 0.0002 0.013 16.4 2.7 1 23 388 411 388 411 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.1	70	4.6	0.6	1	23	18	40	18	40	0.93
2	13	0.094	6.1	8.0	3.4	2	19	47	64	47	68	0.83
3	13	0.0046	0.29	12.1	0.1	3	21	76	94	75	95	0.93
4	13	0.25	16	6.7	0.0	3	23	128	149	126	149	0.94
5	13	5.3	3.4e+02	2.5	0.6	2	23	156	177	155	177	0.91
6	13	0.0033	0.21	12.6	2.8	3	23	185	205	183	205	0.94
7	13	0.00059	0.038	14.9	0.4	2	22	212	232	211	232	0.94
8	13	0.016	1	10.4	0.2	2	23	248	269	247	269	0.97
9	13	9.8e-07	6.3e-05	23.7	1.4	1	23	276	298	276	298	0.99
10	13	0.00077	0.05	14.6	1.3	3	23	306	326	305	326	0.97
11	13	7e-05	0.0045	17.8	0.4	1	23	332	354	332	354	0.97
12	13	0.00015	0.0099	16.8	3.6	1	23	360	382	360	382	0.94
13	13	0.0002	0.013	16.4	2.7	1	23	388	411	388	411	0.97

Sequence Information

Coding Sequence: ATGGATGAATTAAGAGGGCATTCTAAAGAGCATCACAACGCCTGCTACGCGTATAATTGCATTGATTGTACTGataaatttaatacttttaacgCTTTTATTGAGCACGTCAGGATGCATAGAGAAGTTTTGAGAAACTATTGCCAATATTGTAATAAGAAATTCAAAACGAAAGAGCTATGTATGTCACACGTTCCGACGCACTTCGAAGGGCCACAGAGGATCTGTGAACAATGCGGAGAGGTCTGCACTGACCCAGACGGTCTGGACCGGCATAAGAAACTATATAAAAAGATCAGTCTGCCGAGAAAGTACAATAAGATTAGACCGAAGGTAATCTTAGATAATGACGAAAAGTCTTGGACTGATTACGAGTGGGCTTGCCAGGAATGCTTCATAAAACTACCCGACGTGTCAGCGCTGAGGCAGCATGTACAGAATATTCACAACAAATGCTTCGCGATGCGATGCTCCGATTGTCTGCGGTTCATGAGAAATTATAGGACTTTCGTCGCCCATGTGACTGCCCATAGACCTTATTTGACGAAACACTGTCAATACTGCAACATGCATTTTAAAGATGAGGCTCTGTTGAACCAACATATCGACGACCATCTGAAGGGATCCCAGAAACCCTGCCACGGATGCGGCCAAATCTTCCCAGACAACTTCCAGATGTCCCAGCACATGAAGAAATACAACTCACCACGATGCGAAAGCGTTTTGACCACAGAAGACTTGACATGCGACATTTGCTCCAAAGTCTCTGTGGACATAATAAAATTTAGAGCTCATAGAAAAATTCACGATGAGAAAAAATGCGACTTCACCTGCGAAACTTGTGGTAAAGCATTTTATAAAAACTACATGTTAACTGACCACATTAAAACTCATAGCAGTGTTAAGTCGGAGATTTGTCAAGTTTGCAATAAAGGATTTCATTTGAAATCTAAATTAAAAGCCCACGTCGCGACACATTCTGATAACCGGCCGTTCATTTGCAATGAATGCGGCAACGGTTTCAAAACTAAAGTTCGATTAAAACAGCATCTATTGATCCATGggaacaataaaaagtttaaatgcAAGGTCTGCAGCAAagaatttaattacaaaaataatttgagAAACCATGAATTTCAGCATACCGGCCTAAGACCATATCCTTGTCAAAGTTGCGAAAAAACTTTCACCAATTGGGCTAACTGTAATAAACATATGATTAGGAAACAcggcatacatttggctaaatcTAAAGTGACTGCCTACGGTAAGTTAGAGATTGATAGAAAAACTGGGGAACCTATGAAATTGGCTTCGGATACTAGCTCTAGAGAGTGGCTGAGTGAAATGATGAAACCTATGAAAAGAGGGAAAAAAACTGGTATCGATATAAAAGTGaccaaaaaaacacaaaattataaagaatttaaataa
Protein Sequence: MDELRGHSKEHHNACYAYNCIDCTDKFNTFNAFIEHVRMHREVLRNYCQYCNKKFKTKELCMSHVPTHFEGPQRICEQCGEVCTDPDGLDRHKKLYKKISLPRKYNKIRPKVILDNDEKSWTDYEWACQECFIKLPDVSALRQHVQNIHNKCFAMRCSDCLRFMRNYRTFVAHVTAHRPYLTKHCQYCNMHFKDEALLNQHIDDHLKGSQKPCHGCGQIFPDNFQMSQHMKKYNSPRCESVLTTEDLTCDICSKVSVDIIKFRAHRKIHDEKKCDFTCETCGKAFYKNYMLTDHIKTHSSVKSEICQVCNKGFHLKSKLKAHVATHSDNRPFICNECGNGFKTKVRLKQHLLIHGNNKKFKCKVCSKEFNYKNNLRNHEFQHTGLRPYPCQSCEKTFTNWANCNKHMIRKHGIHLAKSKVTAYGKLEIDRKTGEPMKLASDTSSREWLSEMMKPMKRGKKTGIDIKVTKKTQNYKEFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -