Basic Information

Insect: Agonopterix alstromeriana
Gene Symbol: -
Assembly: GCA_963924505.1
Location: OZ004672.1:7863866-7871508[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.035 2.3 9.3 1.2 1 23 290 312 290 312 0.99

2 12 3.4 2.2e+02 3.1 6.6 2 23 320 342 319 342 0.90

3 12 0.091 5.9 8.0 3.1 1 23 346 368 346 368 0.96

4 12 0.00011 0.0071 17.2 1.5 1 23 373 396 373 397 0.97

5 12 0.095 6.1 8.0 0.0 1 23 400 423 400 423 0.95

6 12 0.075 4.8 8.3 0.0 2 20 434 452 434 454 0.95

7 12 1.5e-06 9.8e-05 23.1 0.2 3 23 464 484 464 484 0.99

8 12 0.062 4 8.5 0.7 3 23 494 515 493 515 0.94

9 12 2.9e-05 0.0019 19.0 3.3 1 23 532 554 532 554 0.98

10 12 1.4e-05 0.00093 20.0 0.7 1 23 560 582 560 582 0.98

11 12 1.1e-05 0.0007 20.4 0.9 1 23 588 611 588 611 0.96

12 12 0.0075 0.48 11.4 6.2 1 23 617 640 617 640 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.035	2.3	9.3	1.2	1	23	290	312	290	312	0.99
2	12	3.4	2.2e+02	3.1	6.6	2	23	320	342	319	342	0.90
3	12	0.091	5.9	8.0	3.1	1	23	346	368	346	368	0.96
4	12	0.00011	0.0071	17.2	1.5	1	23	373	396	373	397	0.97
5	12	0.095	6.1	8.0	0.0	1	23	400	423	400	423	0.95
6	12	0.075	4.8	8.3	0.0	2	20	434	452	434	454	0.95
7	12	1.5e-06	9.8e-05	23.1	0.2	3	23	464	484	464	484	0.99
8	12	0.062	4	8.5	0.7	3	23	494	515	493	515	0.94
9	12	2.9e-05	0.0019	19.0	3.3	1	23	532	554	532	554	0.98
10	12	1.4e-05	0.00093	20.0	0.7	1	23	560	582	560	582	0.98
11	12	1.1e-05	0.0007	20.4	0.9	1	23	588	611	588	611	0.96
12	12	0.0075	0.48	11.4	6.2	1	23	617	640	617	640	0.96

Sequence Information

Coding Sequence: ATGGAAGATTATAAATTCTGTAAGCTGTGCTTAGTGACCGATGTGAAAATGTTCAACATAAATACACCTTCCTTCCTTTCGTTATTCCAAATATACTCCGAACTTGTACAATTtATCTGTGAAGATTATCAAGTGTATGCTTGTTATGAGTGTGTCTGTCTACTGCGCAAGTGTCAAGAATTCCGTAACAAATGCTTGACGGCTCTCAGTGTGCTATCTTCTATTCATGTAGACCTCTCCAAGATAACCAaagaaaatgtacaaaatatggACAGAAAATTGTACAACTTGGATTCAAAACTGGCTCGATTTCCCACAATGCTGTGCAATAGTACTGATCACCATCCTCTACCACAAGACTGCTTCGTTACACATGAAAAACTATTTTGGAAGGATGAAATGAAGACTGAACAAGACATGGATCTACAAAGACCAAAAATTGAACTAGATATTGATGCACCTGTTTCTGACAAGAATTCAAATGAAGAAAATACAGACATACTAGATATTACAGTAGAACCGATTGATTGTACGCCCGAAGATGATGACAATTATATCCCAGAAGTCAAAAAGAAACGAAAACCTGcaacaaatttgaagaaaagaaaattaaaatccaCTAAAATTAAAAAGGAACGACAAGACTCTGTGCCCTTAGCAAAGAGACCATTAAAAACTAAACGAAAAGAATACAATTTAAACAAAGACACTTCAAAGAAAGAAGTTAGTGGTCCAATACAAAGTAAAGGTCCCAAATTTAATGCAAGTTGTTTTAAAGATTATGCGACAGTTGAGCTGCTGACCCCAGAGGATGTCAAGAAGGAATTGCTTTTAAGAAAAGAGTCCAGTACATATAAGATTAGTCCGTACAAATGTGAATTTTGCTATAGAGGTTACGAGCTAAAACCGGCATTTGATAACCATATGAAGAAGCATGATAAGgAATATGGAAGTTGGGAATGTGAATACTGTCACCTAAGGTTTACTACAAGAATATCATGGACATTTCATCACAAATCATGCCATAAATACAAATTTATCTGCAAGATCTGCCCTTATGTATGCTATTATACTTATCAAGCAAAGACGCACATGAGTTTTCATAAAGGCAAGAAGTACACATGCAATGAATGTGGAATGGATTTCAGTTTCCCAAACACGCTAATAATGCATAAGCGTGTGAAGCATCACGCGGAGTTCCCGTGCGCGCTATGCGGCAGTATGCTCGCGTCCCAGCGTGGGCTGAATATACACATCGTGATGATACACAAACagGAAAATAATGAAGCGCAGGGACCTAAATGTGCGGAGTGTGATGTTCAGTTCGCGACAGAAACAGCGTGGAAGCGACATCTGGTGCTTTCTTCTAAACATACCGTGAGTAACGGATGCGAAGATTGTGGCGAAACTTTCTCTGATGAAAAAGATTTGAAAATTCACATGAAAGTACATTCTCGGAAAtggagaaattcgaaattttgcAACATTTGTGACAAATGGCTAAAAAGCCGCGGTGAATACAAGAATCACATGACGGAAAATCATCCTCAATCCGATGTCGCGAAGAAGATAACCATTGAAAAACAGATTCAGTTCGTGTGTGAAGAGTGCGGTATGGCTTTCACGAAAAAATGTCTGCTTCACAACCACCAGCGTATCCACAGCAGCGAGCGACCCTTCCAGTGCCGCGAGTGTGGCAAAACATTCAAGGTGCCAAAGCTTTTGTACCAACATGAAAACATACACACTCGCAAACGTGTGTTCCAGTGTGATTTCTGTCAGAAAGAGTACAACACTAAAAGCGCTCTTATAAAACATATAAAGGCTAATCATCTCGggattcgtccgcacaaatgctCCTATTGTGATAAATCATTCCTGCACAAGTATGAAATGAGAACACATGTTAAATATGTCCACTACAAAGAGCCGTGGCCGAAGCGAGACAGGAGTAAAAGAACTACGTATTAA
Protein Sequence: MEDYKFCKLCLVTDVKMFNINTPSFLSLFQIYSELVQFICEDYQVYACYECVCLLRKCQEFRNKCLTALSVLSSIHVDLSKITKENVQNMDRKLYNLDSKLARFPTMLCNSTDHHPLPQDCFVTHEKLFWKDEMKTEQDMDLQRPKIELDIDAPVSDKNSNEENTDILDITVEPIDCTPEDDDNYIPEVKKKRKPATNLKKRKLKSTKIKKERQDSVPLAKRPLKTKRKEYNLNKDTSKKEVSGPIQSKGPKFNASCFKDYATVELLTPEDVKKELLLRKESSTYKISPYKCEFCYRGYELKPAFDNHMKKHDKEYGSWECEYCHLRFTTRISWTFHHKSCHKYKFICKICPYVCYYTYQAKTHMSFHKGKKYTCNECGMDFSFPNTLIMHKRVKHHAEFPCALCGSMLASQRGLNIHIVMIHKQENNEAQGPKCAECDVQFATETAWKRHLVLSSKHTVSNGCEDCGETFSDEKDLKIHMKVHSRKWRNSKFCNICDKWLKSRGEYKNHMTENHPQSDVAKKITIEKQIQFVCEECGMAFTKKCLLHNHQRIHSSERPFQCRECGKTFKVPKLLYQHENIHTRKRVFQCDFCQKEYNTKSALIKHIKANHLGIRPHKCSYCDKSFLHKYEMRTHVKYVHYKEPWPKRDRSKRTTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00028034;
90% Identity: iTF_00028034;
80% Identity: -