Aals017743.1
Basic Information
- Insect
- Agonopterix alstromeriana
- Gene Symbol
- ZEB2
- Assembly
- GCA_963924505.1
- Location
- OZ004681.1:5631536-5643416[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0063 0.41 11.7 1.9 2 23 71 92 70 92 0.96 2 12 0.026 1.7 9.8 0.5 3 23 100 121 98 121 0.93 3 12 0.072 4.6 8.4 0.2 2 23 129 151 128 151 0.88 4 12 9.5e-05 0.0061 17.4 5.0 1 23 157 180 157 180 0.92 5 12 2.8e-05 0.0018 19.1 6.2 1 21 186 206 186 208 0.94 6 12 0.009 0.58 11.2 0.2 1 20 214 233 214 235 0.93 7 12 0.044 2.8 9.0 1.7 2 19 254 271 254 276 0.92 8 12 2.8e-06 0.00018 22.2 2.4 1 23 563 585 563 585 0.98 9 12 2.3e-05 0.0015 19.4 2.5 1 23 592 615 592 615 0.92 10 12 0.0082 0.53 11.3 0.2 2 23 624 646 623 646 0.96 11 12 0.0032 0.21 12.6 2.6 2 23 653 676 652 676 0.93 12 12 9e-06 0.00058 20.6 0.7 1 21 682 702 682 703 0.97
Sequence Information
- Coding Sequence
- ATGACGATGGAAACAAATTTACCGTTCTTCAGTTTACCATTCGTAGATGCAGAGCCATCATGTTTATACAACAAGAAATCTGAAGGTTTCGAAGAGCTTCAGTCACTACCGCCTAACAGTTCGCTCCTAGGACCAGATGAAGTGCTGGCACAGTTCCTGACGGCCGATGGACCACTTGAAGAACCTGATCTCAATGGACCTGCGACATTGCATTGCGAGATCTGTAAGAAACAGTTCGACAATGCTAAGAAGTATTACGGACACTTGAGAGTACATTCTAAGGATAATCTATGGATTTGTGACAAATGCCCGGATCAAAAGTTTTCAACGAAACAGCAGTTAATGAAACACAGTCTGATCCACAAGCCACTGGAAAGAGTGTGGCGCTGTCCACAATGCAGCAAGGCATTTGAAGCATTATGGAGGCTGCAGCAACATCTATTCGCTAAGCATTTAAATTACAGGCCCCACAAATGTGAGCAGTGCGAcaaaacttttcataaaaaatctgatttaaAGAAGCATGTATCCGCAATGCATGAAGTTGAAAAGAAACATTCCTGCCCGGAATGTGACATGCATTTCAAAGATAAGTCCAATTTGAAGCGCCACATGAGTTGTCATACCAAAGAGAAACGTTTCTCTTGTCCTGGATGCGGCAACAGGTATTCACAGATAGCCTCAATGAAGCGCCACAGCAAGAACTGTCCAATGGTGAAGAATTCAAACGAGATTCCCATAGACAATACGCGGAAGAATTACTGTAAAACGTGTGGTATAAGCTTCCAATATAAAAGTGCTTTGCTAGAGCATTGTGTGAGACAACACACCAACCCGCCAAATGAAACagttaaagaagaaaaaaatcaaataaacgCCGATCCAACCGGCACTGTAGACAAAATTGTCGACGACATTCTATCCGCTGAAGACGATTACATGACCATGTCGACTCAAAACGAACTATTAGCTTATAACCAACACATAGACAATAATGACAACTCAATGCAAATAGAATTCCTAAAAGATATGAATCAACTACACACGCTTGACGATGAACTATTCTACAATGATATAGACTTCGATAGCTTTCAAACGAGCCAGATATTTAACACTAATGATATAGATTATAATGCTAACGATAGAAATGCAGAAATCCTATTCGATTTCGCCGATGCCGGACGTAGTATAGACCAAGATATCATGAACGCTTTATACCAAGTCAAAGAACATCTACCAGATGAACTTTTGAATGTACCTCAAATGATAACAGAAGCAGAAAAGCCCAATGAGATTCCAAACCCAGCTGTTTCTGTAAATGAATGCGCTACTATATTCGAAAGCGACGTCGATTTAGAAGCTAGTACCAATCTAGCGGCTAATTTAAATCAGTTAATTGGCGAGAATAGTGTCCAATACATATCTACTGAAGACGACGATACGTTTATTATAAGTTTAAATAGTGAGATAGATGCTGAACAATTGACTGACATGCTGTATATTGGTTTAGTTGATAAGAAGCCTTTAGAGGAAAATATATCAGAAGATCATGATGCTACAGAATTTAATAGCAATGAAGTGGACCCGATAATAGTTAAAATAGAAGAGCCTGTACGTCCTAAGGAGGAGAAAGAATGGAAAGATGAAAAAGAGACTGAAGTGAAGAGAAAAAAGAAAGTAGTTATTTATGTGTGTCGTAAATGTAACAAGGTTTTTAAGAAGAAGGATAATTACAGGTCCCATATTGCGACGCACGAGCCATCGCTACGTAGTCACAAGTGCACAGTGTGCGGGGAGCGGTTCAGTTACCGCTCCACCCTAAACAAGCACCGCGCGGCCAAGCACGAGCCGCGTGTGCTGCCTTCTGTGAAGTGTCATCTGTGCGGGCGAAGTTACGCCGCCGCGTGGATGGTGAAGAACCACATAGAACGTGACCACGAGAGACGACTGCCTCACGCCTGTGACAGAAAGGACTGCGGACAGAAGTTCTACAAGAAAAGCGATCTCGATGTACATAAAAGGTACCACACCGGCGAGCGTCCGTACTCGTGCGATATTTGCGCGCGCAAGTTCCCGCACGCCTCGCATCTGAAGAGGCATATACGCGCCGTCGACTGTACCAAACAGTCTCTTGCCACTGTCAACGTACCGGCCACCCTAGAGCCAAATGGTATTGTACGGGAAGATGGCAAGAGACCAGACGGGATGTCTCTCGTCCCCGGGAAGATGGGTCGGGTGCTGGTGTGGGATGCAACCTGTGTGGCATCCTACACCAGCACCCGACCCGACCGAGagtgggctcggcggcggaatctgccgaaaaggtaa
- Protein Sequence
- MTMETNLPFFSLPFVDAEPSCLYNKKSEGFEELQSLPPNSSLLGPDEVLAQFLTADGPLEEPDLNGPATLHCEICKKQFDNAKKYYGHLRVHSKDNLWICDKCPDQKFSTKQQLMKHSLIHKPLERVWRCPQCSKAFEALWRLQQHLFAKHLNYRPHKCEQCDKTFHKKSDLKKHVSAMHEVEKKHSCPECDMHFKDKSNLKRHMSCHTKEKRFSCPGCGNRYSQIASMKRHSKNCPMVKNSNEIPIDNTRKNYCKTCGISFQYKSALLEHCVRQHTNPPNETVKEEKNQINADPTGTVDKIVDDILSAEDDYMTMSTQNELLAYNQHIDNNDNSMQIEFLKDMNQLHTLDDELFYNDIDFDSFQTSQIFNTNDIDYNANDRNAEILFDFADAGRSIDQDIMNALYQVKEHLPDELLNVPQMITEAEKPNEIPNPAVSVNECATIFESDVDLEASTNLAANLNQLIGENSVQYISTEDDDTFIISLNSEIDAEQLTDMLYIGLVDKKPLEENISEDHDATEFNSNEVDPIIVKIEEPVRPKEEKEWKDEKETEVKRKKKVVIYVCRKCNKVFKKKDNYRSHIATHEPSLRSHKCTVCGERFSYRSTLNKHRAAKHEPRVLPSVKCHLCGRSYAAAWMVKNHIERDHERRLPHACDRKDCGQKFYKKSDLDVHKRYHTGERPYSCDICARKFPHASHLKRHIRAVDCTKQSLATVNVPATLEPNGIVREDGKRPDGMSLVPGKMGRVLVWDATCVASYTSTRPDREWARRRNLPKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -