Aals020599.1
Basic Information
- Insect
- Agonopterix alstromeriana
- Gene Symbol
- -
- Assembly
- GCA_963924505.1
- Location
- OZ004686.1:9261887-9264746[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.014 0.89 10.6 4.9 1 23 153 176 153 176 0.96 2 17 0.00067 0.043 14.7 2.1 1 23 185 208 185 208 0.96 3 17 0.009 0.58 11.2 0.6 2 23 221 243 221 243 0.97 4 17 0.00038 0.025 15.5 0.4 1 23 252 275 252 275 0.95 5 17 3.2e-05 0.0021 18.9 1.2 1 23 287 310 287 310 0.97 6 17 0.00015 0.0095 16.8 1.0 2 23 337 359 336 359 0.96 7 17 0.0015 0.096 13.7 1.2 2 23 369 391 368 391 0.96 8 17 1.1 69 4.7 6.3 3 19 397 413 395 418 0.93 9 17 0.00073 0.047 14.6 0.4 2 21 421 440 420 443 0.94 10 17 0.028 1.8 9.7 1.4 3 23 453 474 452 474 0.96 11 17 0.00032 0.02 15.8 3.0 1 23 479 502 479 502 0.94 12 17 0.00034 0.022 15.7 1.0 2 23 514 536 513 536 0.94 13 17 0.002 0.13 13.3 1.5 1 23 558 581 558 582 0.94 14 17 0.011 0.73 10.9 0.1 2 23 588 609 588 609 0.97 15 17 0.012 0.77 10.8 1.5 2 23 616 637 615 637 0.97 16 17 0.018 1.1 10.3 0.1 1 23 703 725 703 725 0.97 17 17 1.3 85 4.4 3.0 1 23 731 754 731 754 0.96
Sequence Information
- Coding Sequence
- atgtcaacgaaaataaaagaagagatagatttaaaaataaaaatagaaaacacTGGAAATGAACGCAAAGACCCCACATCTTTCCTGCCAGAAGAGCCGATGTCGTACGAAAtcaagaagaagaaaaagaaaaagaagaaaaacaaaGAACTAGATCCGTTTAAGGATATAGAAGAGAAAGTAATGATTACTGAAAGGATAATATTGGATGAAACGGCTTTGGATCCTGAGGTTACTATTAAGGTTGAAAATATTGAAGTAGAATTGGATTTTAATGATTTTGCCAACGACACCGGCCTCATGCTCGAAGCACCGCAAAGCGAAGAAAGCCAAGAACCTGAAATAAAAATCGAGCCACAAAACCACGAAGCAGTAATTCTCACCTTCGAAAACGTTGTCAGCGACAAAAACATTCTCGGCTACAGTCAAACTCAACCCGTGGAACTGACACCTACCCACATCTGCAAAGTATGTCACCTAGTCTTCCAGTCTTCAAGAACTTTGTTAATGCATCAGAAAAGAAAGCATAAAGCCTTCAGAAGATTGTTCAAACATATTTGCGATCATTGCGGCATGTCATACGaaatgaaaaatagtttagttgcTCATATTAAGAGAAAACATGGCCCGAATGCTACCCCGGATGACTACGAAGAAAGAACTTGTGAAATATGTTCTTTAGTCTTCAAAGGAATGCCGAGACTTCGAATGCATATGCGAAGAAAACACGGCTCCTTCCAGGAGTTATTTAAACACGCATGCGAAGAATGTGGTCTCACTTATGAAAAGTATGGAAGTTTAATAGTACATATGCAACGAAAACACACGAATGACAGAAAGCCTTTACCTAACCAGTGGTATAATTGTCCATTTTGCCCTAAAATCTTTACTAGAAGAGAAACTTACGCTCGTCACGTGCAAAGAAAACATCAAGTAGATGAAGACGGTGTTGAATTACAACCaaacgattcgtttttggaagAATGCAGGAACGAAGCGGGAGAAATAAGTTGTAAGCAGTGTCCTCTAGTCTTTTCTTCGcttaatttcttaaaattacaCATGAGACGGAAACATAATGCGTTGAAAGAAGATTTCAGGCTCAAATGCCGTATTTGCAATTTGAGTTACGATAAAATAGAGAGtttaaaacgtcatgtgagaaGAAAGCACGATAGTAAATCACATTGCAACGTGTGTAATAAACAATTTGACACAAAAGAATCATATTTAAATCACTGTCACGGAAAACATATACAAGAATGCACGATCTGTGGACTTATATTCGCATCGCAGGGCGGCCTAGCCAAGCATTTACGTTGTACGCACAAAATAGAAAGTCCAAAAGTTGTATTCTGTAGCATATGCAACGAGGGATTCCACGATAAACGTCAGTTGAAGCCGCATTTAATGCGAGTGCATTTAAAAGTGTCCTACACTTGTAATTTctgtaaaaaagtatttaaagctAAAGAAAGTTATCGTCGGCATATTATTTTTAAGCACCCTAACAGGACCGAACTAAATAGCGAGCTGCAAAAATGTGACCAGTGTCCGGAAACGTTTCCCGATGAATTTGAATTATGTCGCCATATTAATTTCGAACATCGAAACACGTCGGAATTACTCAAAGGCATGGCTGAAATAAAGAAGGAAGAAGATAACTTCCCATTCCAATGTACAAAATGTCCTGATTCCTATTCAACGTGGGAAGAACTAAGATTGCATTACGAACAAAGTCACCACAAAATACAAGACGCTCAATGCCAGATATGCGGTGAAATAGTACGAGGAGATGAGTTACAGAAGCATATAAAAACGATGCACAACGAAATGGCCGAATTGAAGTGCAAATACTGTGATTTTAAAAGTACAGCGCGTGCTAGCATGACCCAGCATATGCTACGTCATAAAAATGCTGCAACCTTACGTTGTGATTTTACAAATTGTAGATACAAAACTTTCTATGAAGTCGCAATGGAGAAGCATAAGAGAAAGCACGCAGATCAAGGTGTCAAATTGCAGTGTACGAAATGCACGTTTCAATCTATGAATAAGTACATCATGAAATATCATGAGGAAGCTCATATGACGGGTAAAAAACGGTATGCATGCGATCAGTGTGATTATGCAACGATTTTACCAGCTAACTTAGTTCAGCATAGGTATAAGCATGCAACGGAGAAGAGATTTAAATGTGAGTTCTGTCCATTCGCATCGAAATATAACACCTCTTTACGTTTTCATGTTAAAAAGAAACATTGTGATCTCCCTACAATGAgttaa
- Protein Sequence
- MSTKIKEEIDLKIKIENTGNERKDPTSFLPEEPMSYEIKKKKKKKKKNKELDPFKDIEEKVMITERIILDETALDPEVTIKVENIEVELDFNDFANDTGLMLEAPQSEESQEPEIKIEPQNHEAVILTFENVVSDKNILGYSQTQPVELTPTHICKVCHLVFQSSRTLLMHQKRKHKAFRRLFKHICDHCGMSYEMKNSLVAHIKRKHGPNATPDDYEERTCEICSLVFKGMPRLRMHMRRKHGSFQELFKHACEECGLTYEKYGSLIVHMQRKHTNDRKPLPNQWYNCPFCPKIFTRRETYARHVQRKHQVDEDGVELQPNDSFLEECRNEAGEISCKQCPLVFSSLNFLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHVRRKHDSKSHCNVCNKQFDTKESYLNHCHGKHIQECTICGLIFASQGGLAKHLRCTHKIESPKVVFCSICNEGFHDKRQLKPHLMRVHLKVSYTCNFCKKVFKAKESYRRHIIFKHPNRTELNSELQKCDQCPETFPDEFELCRHINFEHRNTSELLKGMAEIKKEEDNFPFQCTKCPDSYSTWEELRLHYEQSHHKIQDAQCQICGEIVRGDELQKHIKTMHNEMAELKCKYCDFKSTARASMTQHMLRHKNAATLRCDFTNCRYKTFYEVAMEKHKRKHADQGVKLQCTKCTFQSMNKYIMKYHEEAHMTGKKRYACDQCDYATILPANLVQHRYKHATEKRFKCEFCPFASKYNTSLRFHVKKKHCDLPTMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00028018;
- 90% Identity
- iTF_00028018;
- 80% Identity
- -