Aals012832.1
Basic Information
- Insect
- Agonopterix alstromeriana
- Gene Symbol
- -
- Assembly
- GCA_963924505.1
- Location
- OZ004674.1:15252208-15265980[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.019 1.2 10.1 3.0 1 23 282 304 282 304 0.96 2 12 0.0022 0.14 13.1 1.8 2 23 312 333 311 333 0.94 3 12 0.081 5.2 8.2 1.4 1 23 337 359 337 359 0.97 4 12 0.00044 0.028 15.3 0.9 1 23 364 387 364 387 0.98 5 12 0.00056 0.036 15.0 0.2 1 23 391 414 391 414 0.95 6 12 0.0033 0.21 12.6 0.2 2 21 431 450 431 455 0.92 7 12 0.0004 0.026 15.5 2.2 3 23 465 486 465 486 0.98 8 12 0.051 3.3 8.8 0.9 2 23 506 528 506 528 0.97 9 12 5.8e-06 0.00037 21.2 0.5 1 23 539 561 539 561 0.99 10 12 3.6e-06 0.00023 21.9 1.3 1 23 567 589 567 589 0.99 11 12 0.0025 0.16 12.9 2.0 1 23 595 617 595 617 0.98 12 12 5.2e-05 0.0034 18.2 0.2 1 23 623 646 623 646 0.98
Sequence Information
- Coding Sequence
- ATGGAAGACGTTAAAGTGTGCCGGATATGCCTCGTTATGGACGTTAAAATGTTCAACTTACGTTCGTTTCCATTGGAAACGTATTTTGAACCTCTTATTGGATACAATCCTCTAAGCAACGTGGATATACCTCCATATGCATGCTATGAATGTGCCGATTTGATAAAGAAGTATTATTTATTCAGAGAGCGCTGCACTTCTGGGCAGTTCGTTTTGTACGGCATTCTAAATGCTAAAGGAAAGATAACATCACAAGACATAAAACAGATAGACAGACTACAACTAAACCTAAAATCAGACCTCCAAACTACCCACATTCCAGAAGAAAACATCCACCACTATGTTCACGATGAACAAGAAATTAAAGACGAACCTAATGAATACTCTGTGGCTAGTCCCTCTTCTATTAAACAGGAGGAAAGCGTCGATGGTTTCGCGGACTTCGGTCTGTCCAGTGATGATGACGAACCGCTTTCGTTACATAAGAGTCATAAAGAGAAGAAGGGAAGAGATAAGAAGAGACCtaagaaagaaaagaagaagGATGAGATCAAAGAAGCAGAGTTTCAGTTAGAGGGCCAAGATATTACCTTCGGGGAGCTAGAATTAGATTTGATAACGGGAAGGAAGAAGAAACGCGGCAGGCCCAGAAAGACGGACGTCGGTGAAGAGAAGCAGACGGAGATGAAAGTGAAGAAGCCGCGGCGCACGCGCAACACCGGCGGCGTGTCTGACGACGACATGGACTTGGAGGAGTTTGTCACTATCATGAAGTTATCTATAGAAGAGCAGATGGATGAGATAGAGAAGCGTAAGACGTCGTCCAACTACCTCAACTCAAGGTTCCAGTGCAACCTGTGCTACAAGGGCTTCATAGACACCCACGCGTGGAAACACCACGTCGGCAAGCACGATATTAGTTCAGGTGACATAGAGTGTACGGTGTGCAAGTTTCGTTTCAAGACGCGCCGCACGCTGCTCAAGCACGCCTCCAACCACGAGAAGAAGTACGCCTGCAAGTCGTGCTCCTACGTGTCCAAGACCACGACTCAAGCTAAACAGCATCAGCGGTGGCACAAAGGAGTAACGTATAAATGTCAATACTGTGACGAAGTATCCACAAAATGGACGTCGTACCTAAGCCACGTGCGCATAAAGCACCCCTCGGAGTTCATATGCGGCGTCTGCGGCTACTCGTTCGTCAGCAAGCTCGGCCTCACCATGCACCGCACCATGATGCACAAGGACGTGGCGACGAAGGAAGAAGAGGGAGACAGTAAAGAAGGGCCGTACTGTGAGGAATGCGACGTCAAGTTCATATCGGAGGAGGCCTACAAACGTCACATGGTCACTTCGGTCAAACACACACAGAGCAAAGACTTTAGCAAGGGATGTAGAGTGTGCGGGTCCACGTTCAAGAACTCTGAGGAGCTGCGCGTGCATCACCGCAAGGAGCACGCGCGCCAGCGTCCCAAGAACTACGGCAAGAAGCCCAACAAGATGACCTGGCCCGCCACCTGCGAACACTGTAACGAGGAGATATCGTCCGCTCGGGACTATTGGACGCACTTCCGCCGAGCGCATCCTGACAAGAACTACCCCATACAGAAGAACTACGTCTGTGACATATGCGGCAAGAGCTTCCGGGGTAACGCGTTCCTAGTGTACCACAAGCGTACGCACTCGACAGAACGCGCGTACAAATGCGGGCAGTGCCCCAAAGCGTTCTACAACCGCACCAACCTGCAGATGCACGAGAAGACACACTCAGACTCTCGCCCCTACCCCTGCGACGTGTGCTTCAAGGCGTTCAAGTGCAAGGGCGCTCTAGACAGGCACTATAGGAGTCACACAGGCGTGAAACCGTACGAGTGTGAAGTGTGCGGCAAAGCTTTCGGTCAGTCAAACAGTCGCAAACTTCACGTGAGAACCGTACACCTGAAGCAACCTGCACCCTACGTCAGCCGCAGTCGGTTAGAGCGGCGGAGACAAGGCGCCCAGAGAGAACAGCTCGGACCCTTCGTATACTAA
- Protein Sequence
- MEDVKVCRICLVMDVKMFNLRSFPLETYFEPLIGYNPLSNVDIPPYACYECADLIKKYYLFRERCTSGQFVLYGILNAKGKITSQDIKQIDRLQLNLKSDLQTTHIPEENIHHYVHDEQEIKDEPNEYSVASPSSIKQEESVDGFADFGLSSDDDEPLSLHKSHKEKKGRDKKRPKKEKKKDEIKEAEFQLEGQDITFGELELDLITGRKKKRGRPRKTDVGEEKQTEMKVKKPRRTRNTGGVSDDDMDLEEFVTIMKLSIEEQMDEIEKRKTSSNYLNSRFQCNLCYKGFIDTHAWKHHVGKHDISSGDIECTVCKFRFKTRRTLLKHASNHEKKYACKSCSYVSKTTTQAKQHQRWHKGVTYKCQYCDEVSTKWTSYLSHVRIKHPSEFICGVCGYSFVSKLGLTMHRTMMHKDVATKEEEGDSKEGPYCEECDVKFISEEAYKRHMVTSVKHTQSKDFSKGCRVCGSTFKNSEELRVHHRKEHARQRPKNYGKKPNKMTWPATCEHCNEEISSARDYWTHFRRAHPDKNYPIQKNYVCDICGKSFRGNAFLVYHKRTHSTERAYKCGQCPKAFYNRTNLQMHEKTHSDSRPYPCDVCFKAFKCKGALDRHYRSHTGVKPYECEVCGKAFGQSNSRKLHVRTVHLKQPAPYVSRSRLERRRQGAQREQLGPFVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -