Basic Information

Insect: Agonopterix alstromeriana
Gene Symbol: -
Assembly: GCA_963924505.1
Location: OZ004675.1:9854211-9868107[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00047 0.03 15.2 0.2 2 23 141 162 140 162 0.93

2 11 0.00068 0.044 14.7 2.4 1 23 168 190 168 190 0.96

3 11 8.3e-05 0.0053 17.6 0.3 1 23 284 306 284 306 0.98

4 11 0.13 8.2 7.6 0.1 2 23 313 335 312 335 0.96

5 11 0.00058 0.037 14.9 0.1 3 23 390 411 388 411 0.91

6 11 0.0025 0.16 13.0 0.4 1 23 426 448 426 448 0.94

7 11 3.6e-05 0.0023 18.7 0.2 1 23 478 500 478 500 0.98

8 11 0.00072 0.047 14.6 0.2 1 23 506 528 506 528 0.97

9 11 0.00041 0.026 15.4 0.3 1 23 534 556 534 557 0.95

10 11 0.011 0.71 10.9 1.1 1 23 570 592 570 592 0.96

11 11 0.0027 0.18 12.8 0.1 1 20 737 756 737 759 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00047	0.03	15.2	0.2	2	23	141	162	140	162	0.93
2	11	0.00068	0.044	14.7	2.4	1	23	168	190	168	190	0.96
3	11	8.3e-05	0.0053	17.6	0.3	1	23	284	306	284	306	0.98
4	11	0.13	8.2	7.6	0.1	2	23	313	335	312	335	0.96
5	11	0.00058	0.037	14.9	0.1	3	23	390	411	388	411	0.91
6	11	0.0025	0.16	13.0	0.4	1	23	426	448	426	448	0.94
7	11	3.6e-05	0.0023	18.7	0.2	1	23	478	500	478	500	0.98
8	11	0.00072	0.047	14.6	0.2	1	23	506	528	506	528	0.97
9	11	0.00041	0.026	15.4	0.3	1	23	534	556	534	557	0.95
10	11	0.011	0.71	10.9	1.1	1	23	570	592	570	592	0.96
11	11	0.0027	0.18	12.8	0.1	1	20	737	756	737	759	0.93

Sequence Information

Coding Sequence: ATGGACGGAGACGGGGAGGAGTTCAACCTCCACTGGGAGGAAGAGGTGGAAGTCAAGaatgCTCCAAATGAAGTAGTGGCAGAGGAAGTATCTTCATATGGACTTGAGAATGTTCAAGGAGTGCATTATTCCAATATGCAATCTGAAATTATACAAGACACGGATCAAATGGCTGCGGAGAATCTGATGTTCTTATCTCAAGATGTTGTTAGCTACACGGAGACCGCCGAGCTGGATCCTAACGTGGAGTGTGTCACCGAAGAGGTGATCACTGACGACTGGGTAACACATGGAGGGCAGGATAGGGTGGAAGTAACTATGGATCATTTAGCAAATCCGATTTTAGACATAAAGGAAGAAAATAATGACGACGTTCCACTACCAACAGATCAAGACGAGTACACAGCGATGCGACCGTGGCCGTGCGACTTCTGCTCGCGGCGGTTCCGCAAGAAGGCAGCGCTGATGAACCACATGGTCGCCCACCAGAATGACAGGCCGCACGCCTGCAACCTCTGCGGCGTCCGATACGTGCGCAAGTGCGACCTTATGAACCATCTGAAGGTGCACGCTTATGTGCCGGACAATCATGATACTATCGATTACGAAAACATGATAGAGAACAATCAATTATTAAAACCAAGGAAGAAGCGTGGACGACGGAAAAAGAATCCGGAGCCAGTTGAGGACACAGAGATATGGGAGAACATGACGTCAGCGCGCACGCAGCAGTGGTCGCGGCGCACGCGCTCTCCGGCCAAGCCGCCGCCCACCCCGCCCTCTCCCCCCTCCGAGCCGTCGCCGCCCTCCCCCTCCCCGCCGCCCCGCCCCACCGACCCCTCTCGCCCCTTCGTCTGCAGGCACTGCGGCGTCGGCTTCGCCAGGGAGAAGGCGCTACAGTCACATGCTAGGATCCACGGCGGTGATTCTCCAGTGGAGTGCGGCGAGTGCGGGGAGATGTGCTGGTCGCGGGAGGCGCTGTCCGCACACGCGCGCTCCAAGCACCCCCACCTGCCGCCGCGCACCTCCCAGCCGGACCCAGACTTCAACGACACTGACTCTGGTGACGACGACATGGAGTTTAAACTGTCGCCGGTGTCAGGCGAGGGTCGGGGCGAGAGCTCGGAGCGTGTGATGCTGGACACGACGCGGGGACCCTCGCTGTTCTGCCAGGACTGCGGCGTGGCATTCCAGCGCGCGGACCTGCTGCGCCGGCACGTGTCCGCGGCACACAGTTACAAGCGGCACGACAGCACGAGCAGCACGTGGGGCGAGCACACGTGCGACGTGTGCGGCGAGACCTGCACCGACGCGCTGCAGCTGCTCGCACACGCCGAGCTGCACACAGAGCGACACCGACAGCCCCAGCCcaggttaaaaaaaatgtcaagaGGTCGCAACAACACATCAACGTCGAGTAATTCACGTCAATTCCCTTGCAGAGAATGTGGCAAAGTGTTCGGGTCGCGGTCGTCGCAGCAGATCCACGTGCGGATCCACACGGGCGAGCGCCCCTACGCGTGCCGGTTCTGTTGGAAGGCGTTCGCGGACGGGGGCACGCTACGGAAGCATGAAAGGATCCACACCGGTGAGAAGCCGTACGCGTGCGCAGTGTGCCCGCGCGCGTTCAACCAGCGCGTGGTGCTGCGCGAGCACGTGCGCTCCCACCACTCCGCGCCCGACAGGAGAGCTAACGGAGGTCCATCGTACTGCTGCGTGGTGTGCGGCAGAACGCTTCACTCGAGCGCTGAGCTGGTGCAGCATCTGATCCAGCACTGCGATGCCAACACGGCTCTGAAGAGACAGCCGCAGACCGGCCCCCGCAAATACAAAAGGCGGCGGAAAATAAAGAGCGGCCCGGCACCGACGCAGGAGTGGGACCGCGCGTCCACCTCCCCCGCGGGGTCGGGAGAGCCGCCCCCCTCCCCGTCGCCCTCGCCCGCGCCCGCCCCCTCCCCGCCCGCCtccccgccgcccgcgcccgcgccccgcgcacGACGCAAGAAGCGCCTGCCCGACCCCCCGCCCCGACCTAGGATGATACACACGGAGGAGCCACGACCTAGGATTAAACAGATCCGCAGCCGGCGACCGCCGCGTCACCCGGCGGACGACCTACGCGCCATCCGACCCAACCTGCGCTCCAACGCCTCGCCCCCCGAGGCGCCGCCCTCCCCCACCTCCCCGCCCCCCGACACCAGCGGCCCCTACACCTGCGAGATGTGCTCCATGGAGTTCACGCGGCGAGACGCGCTACTGCTACACGTGCCCATACACATATGA
Protein Sequence: MDGDGEEFNLHWEEEVEVKNAPNEVVAEEVSSYGLENVQGVHYSNMQSEIIQDTDQMAAENLMFLSQDVVSYTETAELDPNVECVTEEVITDDWVTHGGQDRVEVTMDHLANPILDIKEENNDDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAYVPDNHDTIDYENMIENNQLLKPRKKRGRRKKNPEPVEDTEIWENMTSARTQQWSRRTRSPAKPPPTPPSPPSEPSPPSPSPPPRPTDPSRPFVCRHCGVGFAREKALQSHARIHGGDSPVECGECGEMCWSREALSAHARSKHPHLPPRTSQPDPDFNDTDSGDDDMEFKLSPVSGEGRGESSERVMLDTTRGPSLFCQDCGVAFQRADLLRRHVSAAHSYKRHDSTSSTWGEHTCDVCGETCTDALQLLAHAELHTERHRQPQPRLKKMSRGRNNTSTSSNSRQFPCRECGKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPSYCCVVCGRTLHSSAELVQHLIQHCDANTALKRQPQTGPRKYKRRRKIKSGPAPTQEWDRASTSPAGSGEPPPSPSPSPAPAPSPPASPPPAPAPRARRKKRLPDPPPRPRMIHTEEPRPRIKQIRSRRPPRHPADDLRAIRPNLRSNASPPEAPPSPTSPPPDTSGPYTCEMCSMEFTRRDALLLHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00028014;
90% Identity: iTF_00028014;
80% Identity: -