Aals003032.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agonopterix alstromeriana
Gene Symbol
L
Assembly
GCA_963924505.1
Location
OZ004663.1:6408341-6412544[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.64 41 5.4 5.8 1 23 3 25 3 25 0.97
2 16 8.6e-06 0.00056 20.7 4.1 1 23 31 53 31 53 0.99
3 16 2.7e-05 0.0017 19.1 0.1 1 23 59 81 59 81 0.98
4 16 0.00023 0.015 16.2 0.1 2 23 97 119 96 119 0.96
5 16 4.3 2.8e+02 2.8 0.1 9 23 150 165 146 165 0.93
6 16 0.31 20 6.4 0.0 3 23 227 247 226 247 0.97
7 16 0.14 9.2 7.4 0.0 2 23 261 282 260 282 0.91
8 16 0.00085 0.055 14.4 0.3 1 23 290 313 290 313 0.94
9 16 0.032 2.1 9.5 0.1 1 23 318 341 318 341 0.93
10 16 0.00045 0.029 15.3 0.2 1 23 395 419 395 420 0.95
11 16 0.0002 0.013 16.4 0.1 2 23 480 501 479 501 0.96
12 16 0.059 3.8 8.6 0.0 1 23 509 531 509 531 0.98
13 16 1.7 1.1e+02 4.0 0.7 2 23 539 560 538 561 0.93
14 16 0.89 58 4.9 0.3 1 23 635 657 635 657 0.94
15 16 0.0036 0.23 12.5 0.1 1 20 665 684 665 687 0.95
16 16 0.1 6.7 7.9 0.3 1 23 694 716 694 716 0.94

Sequence Information

Coding Sequence
ATGCCGTTCCGCTGCGAGTTCTGCTCCCGCCTGTTCAAGCACAAGAGGTCGCGGGATCGGCATGTCAAGCTTCACACGGGCGACCGCAAGTACCGGTGTGCGCATTGCGAGTCTGCTTTCTCAAGGAGcgACCACCTGAAGATCCACATGAAGACTCACGACAACCAGAAGCCATTCCAGTGCACAGTGTGCAACCGCGGCTACAACACTGCAGCGGCTCTGACGTCACACATGCAGGGTCACAAGCGCGACCGCGATGGCCGAGAGCCCGACCGCAGGCGCGCGCTGCGTTGCCTGCGCTGTGGGGACGCTTTCCGGAGACCTGACTTGCTACAGGCTCACATGTCGACCGCACATGGTGTTGATTCAGCAGCAATGACTCCACCTCGCCGAATAGCCTCCCAGCCACCACCCACTCTCCTCGCTTGCATCTACTGCACCCGTGATACTTTCACCACCATGGAGCAGTTGCAGTTGCACGTTCGAGCTGCTCATTCGGCATTATTGAATGGTGAAACACCAGCGCAAGTCGATCAGCCAGCGCCTACAGATCTAAGCCGCAGAGCTCAGGACGAGCCTATCAAACGCTCTGGTTCTGCCAACGAGAATCATCAGAACAAACGTCGCCGCTCTGGATCTGCAACTCCGCAGACGGCCTTGTCACCGAGTACACTTCTATGCAATCAGTGTGACGCAGCACTTCCCGATTTCGAAGCTTTCCGAGCCCATTTGAAAGGACATTTAGAAGAAGGTGGTGAATTGGGTAATTCAAGTCCAGTACCATGTCTGCACTGTGGGGCGACGTTCGCAGACGCTGCCGCCTCTGAACGCCATCTCACGGCTCACTACCTGGCGGTGTCCTGCGAATATACTTGCCACAGTTGCGCTCGTAGCTTCCCTGCGCCCGATGATCTGCAGAAGCATCTCCTCGACCTTCATGCGCATCACCTTTATCGTTGCGCTTTGTGCAAGGAAATATTTGAATCCAAAGTGGCCATGCAGGTGCACTTTGCAGTCGCGCATAGTGGTGAGAACAAAGTGTGGGTGTGTCGAGGGTGTGGCGCGGGCGCGGGCCCGCTGCGCTCGGAGGCGGAGGGCGCGGCGCACGTGCTGGCGCGGCACGCGGCGCGCTGCGCGTGCGGCGCCGTGTTGTCCGGAGCGCGCGCCCGCTCCCACCGCGCCTACCGCTGCCCCGCACCCGCCTGCACCGAAACCTTCGCCGTACAATATCTGTTAGAACGACATATGCAGGCGCATCACGCTGTGTCACATCAGGGATTAAACGGCGATGCAGCCAGACCTAAAAGGCTAGATAACAACGACGCTGCCGATGTTGGCGATGGAACTTGCTCTCCTTGCACCGTGGGTCCTGATAACAACGGAACAGCTCCTACTGGGACCGAGGAACGTCGACGCAAGAACGGTGCAGTCGCGCTGCAGTGTGCCTACTGTGGCGAGCGCACGCGCAGTAGAGCAGAGTTGGAAGCGCACACACGAGCGCACTCCGGCGCCGCTGCTGCTCGACACAAGTGCCTCATCTGCGATGAAGTACTGCCTTCCGCTGCGGTGCTGGCCGAGCATAAGCTGACGCATTGCAAGGTTGTAGCAGGTGATACATGCGCTCGTTGCCGGGCCCGGCTTCCCTCTGAGGAATCGTTCCTGACTCACATGGCGCGGCATCACCCCGCCCTCCCCGCTCCCTGCGTCGTCTGCCGACAGACCCTCGCTTCCGAGGCCGAAGCTCGGCTCCACGCCCGGTTTCATCTGAGGGTCACTGAAGACGAGCAGAGGTGCGCCATTTGTCTGCGGGCGCTGTCTGAAGGAGAGGTGGGGGAGGGTGCCCGCGCCTGCTCGGCGTGCTATGCAAGGCATGCTGCCCCCCGCCCTCCTCCTCCAGCGGACCACGACTGTAGACTATGTCGCCGAGCGCTAGGCTCTCCAACTCGCTTGCAGgCGCATCTAATAGAGCACACATTTGCTGGTATTGGAGCGTTTACCTGCTACTTATGTTCAGCTGTTTTTACAAGTGCAGCGGGCTTACAGCGTCATCTCCCAGAGCATGCTGCCGCTCCAAGGCCCTACGACTGCGGCCGATGTGGACTAAAGTTCTTCTTTAGAGCAGAACTTGACAACCATGCCTTTGTTCATATAGAGGAGGCAGAGATAGCGCAGAGGGCGTTTTACGAGGCTTATGCGAGAGGAGCAGCATCAGCGTGGGCTGCACTCGCACCACAGGAACCGCCCCCAGTATCGACCCCGACCACTGTCGAAGTTCCCGTGAAACGTGAGCCTGAGATAAAGGAGGAGCGGACCGATGAATACATCGAGGTATCCTCCCCTCCTCCCCCGCCTCCTGCATCAGAAACCACTCCGCCGCCGGTCGTGAAACAAGAGAAACCGGATGAAGACTGA
Protein Sequence
MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDRDGREPDRRRALRCLRCGDAFRRPDLLQAHMSTAHGVDSAAMTPPRRIASQPPPTLLACIYCTRDTFTTMEQLQLHVRAAHSALLNGETPAQVDQPAPTDLSRRAQDEPIKRSGSANENHQNKRRRSGSATPQTALSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELGNSSPVPCLHCGATFADAAASERHLTAHYLAVSCEYTCHSCARSFPAPDDLQKHLLDLHAHHLYRCALCKEIFESKVAMQVHFAVAHSGENKVWVCRGCGAGAGPLRSEAEGAAHVLARHAARCACGAVLSGARARSHRAYRCPAPACTETFAVQYLLERHMQAHHAVSHQGLNGDAARPKRLDNNDAADVGDGTCSPCTVGPDNNGTAPTGTEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRARLPSEESFLTHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRVTEDEQRCAICLRALSEGEVGEGARACSACYARHAAPRPPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHAAAPRPYDCGRCGLKFFFRAELDNHAFVHIEEAEIAQRAFYEAYARGAASAWAALAPQEPPPVSTPTTVEVPVKREPEIKEERTDEYIEVSSPPPPPPASETTPPPVVKQEKPDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01437318;
90% Identity
iTF_00674525;
80% Identity
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