Aals022113.1
Basic Information
- Insect
- Agonopterix alstromeriana
- Gene Symbol
- -
- Assembly
- GCA_963924505.1
- Location
- OZ004689.1:4567562-4583221[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.064 4.1 8.5 1.5 2 23 17 39 16 39 0.89 2 24 9.3 6e+02 1.7 0.1 2 23 65 87 64 87 0.88 3 24 0.096 6.2 8.0 0.2 2 23 110 131 109 131 0.97 4 24 0.0035 0.23 12.5 0.2 1 23 135 157 135 157 0.98 5 24 2.8e-06 0.00018 22.2 4.4 2 23 163 185 162 185 0.97 6 24 0.13 8.3 7.6 1.7 2 23 192 214 191 214 0.97 7 24 0.0035 0.22 12.5 0.5 2 23 221 243 220 243 0.95 8 24 0.013 0.83 10.7 0.1 1 23 249 271 249 271 0.96 9 24 0.062 4 8.5 1.6 1 13 277 289 277 290 0.93 10 24 0.73 47 5.2 3.0 1 23 394 417 394 418 0.93 11 24 2 1.3e+02 3.8 0.3 2 23 445 467 444 467 0.92 12 24 3 1.9e+02 3.3 0.6 2 23 563 585 562 585 0.92 13 24 0.00058 0.037 14.9 0.1 1 23 685 707 685 707 0.97 14 24 2.1 1.4e+02 3.7 0.5 3 21 735 753 734 754 0.95 15 24 0.71 46 5.2 0.4 1 23 826 849 826 849 0.92 16 24 0.27 17 6.6 0.3 2 23 876 898 875 898 0.93 17 24 0.15 9.5 7.4 1.7 2 23 921 942 920 942 0.96 18 24 0.0025 0.16 13.0 0.1 1 23 946 968 946 968 0.98 19 24 0.013 0.87 10.6 0.8 1 23 973 996 973 996 0.96 20 24 0.83 53 5.0 0.3 2 23 1004 1026 1003 1026 0.88 21 24 9.7e-05 0.0063 17.4 3.7 1 23 1033 1056 1033 1056 0.97 22 24 0.038 2.5 9.2 2.3 1 23 1062 1084 1062 1084 0.95 23 24 6e-05 0.0039 18.0 7.5 1 23 1090 1112 1090 1112 0.98 24 24 0.00061 0.04 14.9 0.5 1 23 1118 1141 1118 1141 0.98
Sequence Information
- Coding Sequence
- ATGCACTCCAACGCTAACCCCATCAAATGGAAGGATTTGACTGGCATCCACTGCGATTACTGCCCCAAACGACGAAAATTATCCTCAGAACTTAAAAACCACTTTGTAGTTTCGCATAGAAACGAAGACTTTATAAAGTCTAAATTATTAACGTTTGCTAAAAACGTTGTTAAATTAGACGTCACAAACTTGAGATGCGATTTGTGCTTAAATGAAATAGGTACTCTCGACGATTTGCTAAAtcatttgaaaataaagcacGATATCGACGTGCATACAGACGTCCTAAACACATTCCTGCCCTTCAAATTCGACGAGGACCACATGCGGTGCGCTATCTGCGACAACGACTACCCAGTTTTCAAAATGCTACGCGAACACATGAATTCGCATTTCAGGAACTTCGTTTGCGATATTTGCGACGCTGGCTACGTTAATTACGAAATGCTTTATCGTCACAAACTTAGGCATACGGGAACCGAGACTAAATGCAGCCATTGTGACAAGACGTTTAAAAGTCTATCTAACATGCGTCGGCATTTACAAACAGTTCACTTGAAGATCAAGAAGAATAAATGCAATTTCTGTGACGAACGCTTCAATGAGTTCAATCAAAAGTTGATACATATGAAGAAAGTTCACTCCTTAAATATGAATCTGAAATGCTCCTCCTGCGATAAAACTTTCCCGACACCTCGCGCGCGTTCAGCACACGTAAGAAATTTCCACTTATTGGAGAGGAACCATATATGCGCAATTTGTAACACAGGATTTTATTCAGCTGTTATTCTCAAAGCTCATATGATAACGCATAACGTAGTGAAATGGTACAAATGCCCTCATTGCTCGAAGTCTTACCCAAGGAAAGGTATACAACGTCTATTCGTGAACGTGAAAACGGAAGGCATTGAAGATAACTTAAAAAGGAATGATCATGAGACTGAGGTAAAATTAGAAATAATAAACGAGAAATGTGCAAAAGATTCAGCTAAAAGGAAACGTGGAaaatctaaaaagaaaaaagaaaaatctggcaAAGATAAAAAGGATGTGAAAGACGGAGATGACAAAATAtcttatttaaaaatcaaagaGGAGCTTGCCAAACATCACACTAATATAAAAGAGATTATGAAACATTCCAATGCTACTCCAATTAAAAGTTACGGGGGAATTGGTTTCATGTGTTGCTATTGCGATGACAAATATGCCAAAGCGGCTGATCTCAAACAACACACAATTGAAAAACACCACGAAATATCCAAAGCCAGTTTTATGCAAAAGAAGATGAATCTTTACGGATACTGTGTTAAGCTAGACATCACTGAATTAAAGTGCAAAATATGTGAAGAGAAAATGGACGCATTAGATAAATTAATCCACCATATCAAAGATGCGCACAATAGCAAAATACACACAGATCTAAGAAATAACATTATGTGTTTTAAATTCGATAATGGTGTAAAACGGCTAATTAACAACGACAGTGAGAGCGAAACATATATGACGAACGAATCTGATCCAGATGATAAAGAAATAGCACCGTCTGCTTCGGAAATGGTGAAAGAGAAATTAGATGTCGACAAGCATTGTACCAATTTGAGAGAGATACTGCTTTGTTCAAACGCTACGCCCATTAAAACCCCATATAATATGTATGGATGCTCTTTCTACGTTACAGGACTGATGTGCAAAATATGCCGCTCCGACAGCGACTCCTTGGAAGAGTTGATCCATCATCTGAAATTCGTTCATGGCAAAAAGATGTCCCCGGATTCAATGACCCACATTTTGCCTTTTAAATTTGATACCAAAGAGTTCCGATGTATCATTTGTGACCGTGTCAAACATCGCGTTAACTACAACAATGAAAGCGAAACATATATGACGAGTGACTCCGATCCAGATTATGAACAAAAGACAGACCCAAAATCCTCGTCAGCTTCAAAAATAGTGAATGAGAAATTAGATGTTGACGAGCATTGTACCAATTTGAGGGAGATACTGCTTTGTTCAAACGCTACTCCTATTAAGAAACGTGGCCATAATATCTACGCATGTTCTTTCTGTAAGGAAGTTTTCGCCAAGCCTGCAGATCTCAAAGGACACATCATGAACCACGAGGACTTCGCTAAAGAGAAATTAGCAAACAAGAAAGATTCGTACTTAATATGCGTCAGTATAGACGTCACAGCACTGCTCTGCAAAATATGCCACTTCGATATTGACTCCTTGGAAGAGTTGATCCATCATCTGAAATCGTTCATGGCAAAAAGATGTAAACGACGGAAAGTTACCAACAAAAGTAATATCGAGGAAAACacggatttaaaaataaaaactgaagacGATGAAGAACAGGGGACGGTGAAGAAAAGAGCGAAGGGGAACCAATTGGAGATGCATCGATGGACGATAAGACTGATAATGTTGTGTACCAATGCGACGCCGATACGGTGTCGCGGCGGTATTGGGTACGCCTGCTGCTTCTGCTCAGATCAGTACCCAGACCCTGCAGACCTGAAAAAGCACACCTTAGAAGGACACGATGAAACTGTCAAATGCACTTTCATGAAAGGAAAGGATCTATCAAAGTTTTACGTGAAACTCGACATCACATCTTTATATTGTAAATTGTGTGACTTAAAGATTGATACTATAGACAATTTATTCGATCATCTAAAAGACTTTcataagaaaaatatattttgtgatACCAAGAAACAGATTGTACCGTTCAAGTTTGACAGCGAAGGCTTAAAGTGTTCCATTTGTTCGAATAGTTTCCATACGTTCAGAGTGCTAGTAGAGCACATGAATTTACAttttaggaactttgtttgtgATGTCTGTGACGCTGGATTCGTCAGCCAGAGTATTCTATTCCAGCACGTCAAAACTCACAGAACTGGCGAGTTTAAATGCGAGTACTGTTCAAAAATATTTGAGACTCTTCTAAAGAAAAGAGCTCACGAACGCGTAGTCCATACACACACGAATGTCTTGAATAAATGCGGGTATTGCGTACAAACTTTCAAAGATTACTGGCGGAAGGAAAAGCATTTGGCCGCCGCCCATGGAGTAAAAACTCCGCTCTTCAAATGTCAAGCCTGCGACAAAACGTTCACACATCAAAAAGGATTGAGAATCCATACGAAACGCGATCATTTGATGGAGCGGCCCCACGCCTGCACATTATGCGACATGAAGTTCTTTACTGGGAAGAAACTCACGGAACACATGGTGAAGCATACAGGATTACGAGAGTTCCAATGTCATCTGTGCCACAAGTCATATGGGCGGAAGAAGACGTTGAATCAGCACATGCGTAACCATGACGACTATTGTAAGTTTAAGTGCGAGCACTGTGGCCAAGGATTTGTTCAAGAAAACAGCTGGGCTGGTCATGTGAGGACTAAACACGGAGTCACAGTTAGTGTGCCGAATTCCTAA
- Protein Sequence
- MHSNANPIKWKDLTGIHCDYCPKRRKLSSELKNHFVVSHRNEDFIKSKLLTFAKNVVKLDVTNLRCDLCLNEIGTLDDLLNHLKIKHDIDVHTDVLNTFLPFKFDEDHMRCAICDNDYPVFKMLREHMNSHFRNFVCDICDAGYVNYEMLYRHKLRHTGTETKCSHCDKTFKSLSNMRRHLQTVHLKIKKNKCNFCDERFNEFNQKLIHMKKVHSLNMNLKCSSCDKTFPTPRARSAHVRNFHLLERNHICAICNTGFYSAVILKAHMITHNVVKWYKCPHCSKSYPRKGIQRLFVNVKTEGIEDNLKRNDHETEVKLEIINEKCAKDSAKRKRGKSKKKKEKSGKDKKDVKDGDDKISYLKIKEELAKHHTNIKEIMKHSNATPIKSYGGIGFMCCYCDDKYAKAADLKQHTIEKHHEISKASFMQKKMNLYGYCVKLDITELKCKICEEKMDALDKLIHHIKDAHNSKIHTDLRNNIMCFKFDNGVKRLINNDSESETYMTNESDPDDKEIAPSASEMVKEKLDVDKHCTNLREILLCSNATPIKTPYNMYGCSFYVTGLMCKICRSDSDSLEELIHHLKFVHGKKMSPDSMTHILPFKFDTKEFRCIICDRVKHRVNYNNESETYMTSDSDPDYEQKTDPKSSSASKIVNEKLDVDEHCTNLREILLCSNATPIKKRGHNIYACSFCKEVFAKPADLKGHIMNHEDFAKEKLANKKDSYLICVSIDVTALLCKICHFDIDSLEELIHHLKSFMAKRCKRRKVTNKSNIEENTDLKIKTEDDEEQGTVKKRAKGNQLEMHRWTIRLIMLCTNATPIRCRGGIGYACCFCSDQYPDPADLKKHTLEGHDETVKCTFMKGKDLSKFYVKLDITSLYCKLCDLKIDTIDNLFDHLKDFHKKNIFCDTKKQIVPFKFDSEGLKCSICSNSFHTFRVLVEHMNLHFRNFVCDVCDAGFVSQSILFQHVKTHRTGEFKCEYCSKIFETLLKKRAHERVVHTHTNVLNKCGYCVQTFKDYWRKEKHLAAAHGVKTPLFKCQACDKTFTHQKGLRIHTKRDHLMERPHACTLCDMKFFTGKKLTEHMVKHTGLREFQCHLCHKSYGRKKTLNQHMRNHDDYCKFKCEHCGQGFVQENSWAGHVRTKHGVTVSVPNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -