Basic Information

Insect: Agonopterix alstromeriana
Gene Symbol: -
Assembly: GCA_963924505.1
Location: OZ004661.1:2344772-2355095[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 8.3e-05 0.0054 17.6 3.6 1 20 262 281 262 284 0.94

2 9 7.2e-05 0.0047 17.8 1.7 1 23 290 312 290 312 0.99

3 9 1.9e-06 0.00013 22.7 2.1 1 23 318 340 318 340 0.98

4 9 2.6e-06 0.00017 22.3 2.5 1 23 346 368 346 368 0.98

5 9 9.2e-06 0.00059 20.6 0.1 1 23 374 396 374 396 0.95

6 9 1.4e-06 9e-05 23.2 0.7 1 23 402 424 402 424 0.98

7 9 0.00023 0.015 16.2 2.2 1 23 430 452 430 452 0.99

8 9 0.00042 0.027 15.4 1.6 5 23 461 479 459 479 0.94

9 9 7.3e-06 0.00047 20.9 5.5 1 23 485 508 485 508 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	8.3e-05	0.0054	17.6	3.6	1	20	262	281	262	284	0.94
2	9	7.2e-05	0.0047	17.8	1.7	1	23	290	312	290	312	0.99
3	9	1.9e-06	0.00013	22.7	2.1	1	23	318	340	318	340	0.98
4	9	2.6e-06	0.00017	22.3	2.5	1	23	346	368	346	368	0.98
5	9	9.2e-06	0.00059	20.6	0.1	1	23	374	396	374	396	0.95
6	9	1.4e-06	9e-05	23.2	0.7	1	23	402	424	402	424	0.98
7	9	0.00023	0.015	16.2	2.2	1	23	430	452	430	452	0.99
8	9	0.00042	0.027	15.4	1.6	5	23	461	479	459	479	0.94
9	9	7.3e-06	0.00047	20.9	5.5	1	23	485	508	485	508	0.97

Sequence Information

Coding Sequence: ATGGCTATGGACTTCTCTCGAATTTGTCGCATCTGTCTTGactcaaataaacaaacattcgATATTTTTACCAGCTACTACGTGAAGAGGAACACTTTGTATAGTGAAATGATATCTAATTGCACGAAAATTAAGCCGTACCAAGGGGATGAACTTCCAAGGCTCATTTGCAAAGAATGTTGCAGACAATTGAAGAGGACATACACCTTCAACCTCCAATGTGAGGAGAGTGataagaaattaaaatgttacataGGAAGAGAAGATGCTCTGACAAATGGGACAAAGGAAGAAAAGCACCTAAAGAGCGAGAGTGAAGATTCTATAAAGGATAAGAATATAGATGAACAGAAATTACTTATCTCAGGGTTACATGTAGAAGCTGAAAACAAGGAAGGCATTAAGCTTGAGCCCAGCTTTATGTATGATGATCATGGAAGCTGTTGGGATGGTAAAGACGATAATTCAATGCTTGAAGAAATCAAATCTAATAATCATTCAAAAGAGCCCAGCCTTACGAATGAAGAAGATGAAAGTTGCTGGGACGCAGAAGACGATAATTTGTTGCTTGacgaaataaaatcaaacaagCAGTCGAAAGGTCAACTACAAATTCCCGTCACTAACTCCTGTAAACTAGTGACCACTCACAATATCAAACAATTAAGTCCAACGGGCTCAGAGAATGACAAGTCCGCTTCGGAACCCGTCACGGCCCAACCCAGTTCTCCTGTTGTGCTGCTGGAGGGGGAGCTACCACCGCTGCCGGAGAGCAAGCTGCCGCATCAATGTGACATTTGTGGCAAATTTCTCAGCACTAAAAGCAACCTTAAGGCCCACAAGATATGTCACACTAATCTGAGGCCTTATAAGTGTACAGAATGTCCCGCATCGTTCAGAGGACATAGTGCCTTATTCCAACACAAGAAGGTTCACACTGGTGAAACTCCTTACCACTGCGAGTACTGCCCCAAGCAGTTCAGCCGTCGCACCGGTCTCGTCAATCACATTAGAATGCACACTGGTGAGAAACAATATTGCTGCGACATTTGCTTCAAAACGTTCGTGCAGAGTGCGCAGCTGTCGATACACATGCGGAGACACAAGGGGGACAAACCATTCTTGTGTCAGGATTGCGGAAAAGGGTTCCCTATAAAGGCAGACCTGAAGGTCCACCAGCGCATCCACAATGGCGAGAAGCCGTACTCGTGCCATCTCTGCGCCAAAACCTTCGCGACCTCCGGCAACCTCTCCATACACATCAGGATACACAATAAGGAGATCAGGTATAGATGCAAGGAGTGTGCGCGCGGGTTCGTGACTTGCAGCGCATACAATGTGCACTTGAAGCGACACAAGGGGCAGCGCGACTACCACTGCGAGTGTGGCAAGACGTTCTACACCTCCTCCGCTCTGAAGCAGCACAGAGTTGTGCACACAGGAGAAAAGAAATATCAATGCAAAATCTGCGATAGAAAATTCACACAGACAAGCCACCTCAGCAGGCATTTCAAGAGAGATCACGCGAAACCAAACGCGCCCGTACCTTCTTCTGACCACTACAAGTTGGTATTACAGGACAGTGCCAGCAAAGTGTTTGGACTCGGTGACACTGAGAAATTGAACCCTGGCGTCAAGTGTGAAGGTTCATAG
Protein Sequence: MAMDFSRICRICLDSNKQTFDIFTSYYVKRNTLYSEMISNCTKIKPYQGDELPRLICKECCRQLKRTYTFNLQCEESDKKLKCYIGREDALTNGTKEEKHLKSESEDSIKDKNIDEQKLLISGLHVEAENKEGIKLEPSFMYDDHGSCWDGKDDNSMLEEIKSNNHSKEPSLTNEEDESCWDAEDDNLLLDEIKSNKQSKGQLQIPVTNSCKLVTTHNIKQLSPTGSENDKSASEPVTAQPSSPVVLLEGELPPLPESKLPHQCDICGKFLSTKSNLKAHKICHTNLRPYKCTECPASFRGHSALFQHKKVHTGETPYHCEYCPKQFSRRTGLVNHIRMHTGEKQYCCDICFKTFVQSAQLSIHMRRHKGDKPFLCQDCGKGFPIKADLKVHQRIHNGEKPYSCHLCAKTFATSGNLSIHIRIHNKEIRYRCKECARGFVTCSAYNVHLKRHKGQRDYHCECGKTFYTSSALKQHRVVHTGEKKYQCKICDRKFTQTSHLSRHFKRDHAKPNAPVPSSDHYKLVLQDSASKVFGLGDTEKLNPGVKCEGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00028007;
90% Identity: -
80% Identity: -