Basic Information

Insect: Agonopterix alstromeriana
Gene Symbol: -
Assembly: GCA_963924505.1
Location: OZ004673.1:14082914-14084974[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.5e-06 0.00023 21.9 1.7 1 23 174 196 174 196 0.98

2 9 3.4e-08 2.2e-06 28.3 1.6 3 23 204 224 202 224 0.98

3 9 0.00012 0.0078 17.1 0.3 1 23 230 252 230 252 0.98

4 9 1.2e-05 0.0008 20.2 1.7 1 23 258 280 258 280 0.99

5 9 2.6e-05 0.0016 19.2 1.7 2 23 453 474 452 474 0.96

6 9 3.3e-09 2.1e-07 31.5 1.6 1 23 480 502 480 502 0.98

7 9 0.0028 0.18 12.8 0.6 3 23 510 530 508 530 0.97

8 9 7.2e-05 0.0046 17.8 1.5 1 23 536 558 536 558 0.99

9 9 0.022 1.4 10.0 0.8 1 23 564 588 564 588 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.5e-06	0.00023	21.9	1.7	1	23	174	196	174	196	0.98
2	9	3.4e-08	2.2e-06	28.3	1.6	3	23	204	224	202	224	0.98
3	9	0.00012	0.0078	17.1	0.3	1	23	230	252	230	252	0.98
4	9	1.2e-05	0.0008	20.2	1.7	1	23	258	280	258	280	0.99
5	9	2.6e-05	0.0016	19.2	1.7	2	23	453	474	452	474	0.96
6	9	3.3e-09	2.1e-07	31.5	1.6	1	23	480	502	480	502	0.98
7	9	0.0028	0.18	12.8	0.6	3	23	510	530	508	530	0.97
8	9	7.2e-05	0.0046	17.8	1.5	1	23	536	558	536	558	0.99
9	9	0.022	1.4	10.0	0.8	1	23	564	588	564	588	0.95

Sequence Information

Coding Sequence: ATGCAGCACCAGAGCCCGGGCGGACCCTCGCCACAGCCGGAGCCACAGCTGGCCTCCCCCGCCCCCTCACCGTATCCTCCCGCACCTCCACCCCCGGACCCCACAGGCGCACAAGACGACGCAGCACAACAGCTCGCCCAGCAACAGGCTCAACAGCAAGCGCAGCAACAgcagcaacaacaacaacaaacatcTCCCGAGCATATGCAAGTCGAACAGCAACTACAAAACCAGCAACCACCACCGTCCCAAGACCACCTGGATAGGACACCCTGCTTTGTCCCACAACCTGACTTACAGCAGCAATACACTCCTTATTTCAAAGAGACCAGGCCGGCTAGTCATATGCTCGGTACAGGTGGTTTCCCGTTACATTATCTGAAACAGAACGGCGGAGTCTTATCTCTGGAAGGCCCGCTAGATCAGTATGCGACGCCAGAATTGCGTCACTTACCCGACATCGTGCAACCTGAGCCACCGAAGCCGCGGAAACACAACCCAAACTCTGAACTGCGGCTGTTCAAATGCCTGACTTGCGGGAAAGATTTTAAACAGAAGTCGACGTTGTTGCAACACGAGCGCATCCACACGGACTCGCGGCCATACGGGTGCCCGGAGTGCGGCAAGCGGTTCCGCCAGCAGTCGCACCTCACGCAACACCTGCGCATCCACGCGAACGAGAAGCCCTACGCGTGCCTCTACTGCCCGCGCTCCTTCCGGCAGCGCGCCATCCTCAACCAGCACCTCCGCATCCATTCCGGTGAGAAGCCATATACGTGCGGCGAGTGCGGCAAACATTTCCGCCAGAAGGCCATCCTGAACCAGCACGTCCGCACACACCAAGGCGAGCGCTATTCACACATATATACCCCGGCCCGATCCCCGCGCGCGTCGCTGGCACCGACGTCGATCGGTGCCGGCGGCGCCTGCGATCCTGACCAAACCCCACACGTTCGATTCGGTCTCACAATTGGCCTTCCTATCAAACAAATTCTCGGTCCCCTCGTCGCCCGTCTAGCAGGGCGAGACGCGGAACTGACCGCCGGACGCTCCTACGTGTCGCCGCATCTCATCTTCAAGAATGGAACGACGCCGACGTTGTGGCCGCAGGATGTGCCCTACCCTCCAGATGAGAACAAGGAGGAGGTGCAGTCGACCTACGGTGACGGGGACGGGCAGAACGGAGAACAGCGCGGGTCGTGTTTCTCACCCGGTGACACCGCACAGTATCCAGCTTACTTCAAAGACACTAAGGGACTAAATCACACCGTGTTTGGATCAGGGTTATCACTCCAATATCTTAAAGGTAGTAAACTGCCTGATGTACTCGGGGGTCGCGCAATGCCTCTATATGTTCGTTGTCCAATCTGCCAAAAGGAGTTCAAACAGAAGTCGACACTGCTTCAACACGGCTGCATTCACATAGAGTCGCGGCCGTACCCTTGTCCAGAATGTGGCAAACGATTCCGGCAACAGTCGCATCTCACGCAGCACCTACGCATCCACACCAACGAGAAGCCTTACGGTTGTGTGTATTGCCCTCGCTTCTTCCGGCAGCGGACAATTTTGAATCAGCATCTCCGTATCCACACTGGAGAGAAGCCGTACAAATGCACGCAGTGCGGGAAAGACTTCCGACAGAAAGCTATTCTAGACCAGCACACTCGGACGCATCAGGGTGACCGGCcgttctgctgtcccatgccaAACTGCAGACGGCGGTTCGCTACTGAGCCGGAGGTTAAGAAGCATATCGATAACCACATGAATCCGCACGCGGCAAAAGCGAGGCGCGCTGACGCCTCGAAAACACCGAGGCCGTTGCCGCCGGCGTCGGCCGTAGTGAAGCCGGAGCTGTATTTCCCGCAGTGTTACGCGCCGCCATTCCAGCAGTTCCCGGGCTCGGGCGCCACGGAGTTCAAGCCGGCCGTGGGCCCGGGAGCGCCGGTGCCCTGCCTGCCGGCCCAGTGA
Protein Sequence: MQHQSPGGPSPQPEPQLASPAPSPYPPAPPPPDPTGAQDDAAQQLAQQQAQQQAQQQQQQQQQTSPEHMQVEQQLQNQQPPPSQDHLDRTPCFVPQPDLQQQYTPYFKETRPASHMLGTGGFPLHYLKQNGGVLSLEGPLDQYATPELRHLPDIVQPEPPKPRKHNPNSELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACLYCPRSFRQRAILNQHLRIHSGEKPYTCGECGKHFRQKAILNQHVRTHQGERYSHIYTPARSPRASLAPTSIGAGGACDPDQTPHVRFGLTIGLPIKQILGPLVARLAGRDAELTAGRSYVSPHLIFKNGTTPTLWPQDVPYPPDENKEEVQSTYGDGDGQNGEQRGSCFSPGDTAQYPAYFKDTKGLNHTVFGSGLSLQYLKGSKLPDVLGGRAMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKARRADASKTPRPLPPASAVVKPELYFPQCYAPPFQQFPGSGATEFKPAVGPGAPVPCLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00428362;
90% Identity: iTF_00761912;
80% Identity: -