Basic Information

Insect: Agonopterix alstromeriana
Gene Symbol: ham
Assembly: GCA_963924505.1
Location: OZ004676.1:7031664-7065937[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.13 8.5 7.5 0.0 2 23 106 128 106 128 0.94

2 9 0.002 0.13 13.2 1.8 1 23 135 158 135 158 0.93

3 9 1.9e-08 1.2e-06 29.1 0.1 1 23 164 187 164 187 0.96

4 9 1.6e-06 0.0001 23.0 1.7 1 23 193 215 193 215 0.95

5 9 5.7e-05 0.0037 18.1 6.1 1 23 221 243 221 243 0.99

6 9 7.7e-05 0.0049 17.7 0.6 2 21 251 270 250 271 0.94

7 9 1.4e-08 8.9e-07 29.5 0.7 1 23 668 690 668 690 0.98

8 9 5e-07 3.2e-05 24.6 1.7 1 23 696 719 696 719 0.97

9 9 5.4e-06 0.00035 21.3 3.3 1 23 725 747 725 747 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.13	8.5	7.5	0.0	2	23	106	128	106	128	0.94
2	9	0.002	0.13	13.2	1.8	1	23	135	158	135	158	0.93
3	9	1.9e-08	1.2e-06	29.1	0.1	1	23	164	187	164	187	0.96
4	9	1.6e-06	0.0001	23.0	1.7	1	23	193	215	193	215	0.95
5	9	5.7e-05	0.0037	18.1	6.1	1	23	221	243	221	243	0.99
6	9	7.7e-05	0.0049	17.7	0.6	2	21	251	270	250	271	0.94
7	9	1.4e-08	8.9e-07	29.5	0.7	1	23	668	690	668	690	0.98
8	9	5e-07	3.2e-05	24.6	1.7	1	23	696	719	696	719	0.97
9	9	5.4e-06	0.00035	21.3	3.3	1	23	725	747	725	747	0.98

Sequence Information

Coding Sequence: ATGCTCAATGTGGAAGTCCTGGGTAAGAATGGGATCCGAGGATGGCTGGACGGTACCACGGAGAAGACGAACTGGCTGAAACTGGTGCGGTCGACCAACTACTCCCACGAGGTCAACCTCCAGCATTTGTTGCAAGCCGGACAAGTGTGGTACAAGGTGACCCGCGAGATCCTCTCCGGCCAGGAGCTGCTCCTCGGGCCCAGGACTCCACTGCCGTTGCAAGATGTACTAACACCTCCTGAACGTCAGAACTCTTGCGTGAACTCGTCGGGTGGTTCGCAGGCTGAAGACGAGGAGCGCGAGGAGACGGACCCTAGGTGCTCCTTCTGCGAGGCTCCTTTCCCTAACATTGATGCTCTCGACCGCCACCTGATCCAAGTGCACGCGCAGCCAGCTGCAGCGTTCCACTGTGAACTCTGCGACCGCGCCTACTGCTCCCGCGCTCTGCTGCTCCGACACCGTGCGCTTGCGCATACCGACATCAGAAAGTATCCCTGCGAGAATTGCCCTAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATCCGAGCGCAGCACGCCGGTGCTCGCAGCCACGCGTGCCCTGAATGCGGCAAGACCTTCGCCACATCGTCAGGCCTGAAGCAGCACACCCACATCCACTCCAGCGTTAAACCGTTCCAGTGCAAAGTTTGCTTTAAGGCTTACACCCAGTTCTCCAACCTTTGTCGTCACAAGCGAATGCACGTCGCTTGCCGAGCCTTGATTGAATGCCAAAAATGTGGCCAGTCCTTCACATCCTACGCGTCGCTCACTAAACACAAAAGATTTTGCGACACTGCTGCCGCTGCCAGCGTTAATCTAAGGGGACCAATGCCTCAGGGTTTACCACAGATCCCGCCTTTGCCAAACGTCGGGATGAATACCCCAAATAATGCCAGTCCGTTTCCCATGTACAGGGGACCGGCTCTGCCTCTTTCATACAGCACATTTGCTCATCATTACCCAGCACTGTTTTCTGCTGCCGCTGCAGCATGCCAGCCAGAATTTTTGAATCCTTTATTGTTTAACGTCCAAGGCGCAAGAATAGCAGCTATGGAACATGAGCTCGCCATGAATGCTAACATGGCGAAACAACAGGAAGGTCGTATGTCTGTTAAAAGCATTGACAGCTCAACATCTATTGATGACAAGAAGAAGGAGTTGGATTACGAAAACAGTAAAAGAGATGGTGACATGTCTGATAGAACTTCACCTAAATCTCAAAGCTTGTATGTCAAATCACCGATGTCTACTGAAGAGGTATCTCAACGACAAATACCAGTAATGCCCATGCAAACCCCTATTGTTCCGTTCAACTTCTTAAGAGATGAAGTGAAAAGAAAGTCACCATTCAATTTTTCACTAAAACTgaacaataacaatattcaaggTAAATCAGTTTCTCCGTCTCTACCTAAAGATTTAACAAAGCCTGTCGCTAAGGATGATGATAAGAATTCAGACTATTCAGATAACGAAGATGATTCAAAGAAAGACCTTGGTGATCAACCTCTTGACCTATCTGTTTCTCGTAAGCAATGTGACAAAGAATCTGAAGTGGACAACGATGATCGTTCCTTTCGTAACTCATCGGTCAAGTCTTACTCGCCTCCTGAAAGCCCGGTCGGCCGAAACAGTAAAACGCCTGAGAACGAAACCACAGATGTCGATGTGGAGGAAGTAGAACCAAAAAGAGAGGATTCGCCACCTCAACTTGTGTCCCCACCGTTAGCGTTTCCGATGCCCGTCCATCCTCAACACAACAACAGTCTCATAGAAGCTATGTATCGCCCAAGATTTCCGTCCTTTCATTCAGCATCTGAAGCGATTCTGAATTCATCGCACTCACCTTATGTTCCGAGTCCATTCAATTTTTTATCCCCACTTCTCGGCACAGACGGTCCGGACAGGCAACAGAGCGCGTACGCCGCTAAGTTTAGAGAACTGAGTGCTGGTTCAGGTAAACTTCGGGATCGCTATGCTTgtaaattttgtggaaaagtaTTCCCTCGCAGCGCGAACTTGACTCGTCATCTCCGGACTCATACCGGAGAACAACCATACAAATGCAAGTACTGTGAACGGTCGTTTTCAATATCGTCCAACTTGCAACGTCATGTCAGGAACATTCACAACAAGGAGCGGCCATTTCGGTGTCCATTGTGCGATAGATGCTTTGGACAGCAGACAAACCTAGACCGTCATTTGAAGAAGCATGAAGCCGAAGGAGGGGATTCACCGAGCTCTGCCGATACGGAACGTGAAGACGCGTATTTCGATGATATAAGGTCGTTTATGGGGAAGGTAACATGCTCTCCTGGAGCTCGCACTCCGCCAGCGACGTCGCCTCATGCGCCCCCGTCGCACCCCCCTCACCGACCCTCCGCGCTCGCTATCTCCACATAG
Protein Sequence: MLNVEVLGKNGIRGWLDGTTEKTNWLKLVRSTNYSHEVNLQHLLQAGQVWYKVTREILSGQELLLGPRTPLPLQDVLTPPERQNSCVNSSGGSQAEDEEREETDPRCSFCEAPFPNIDALDRHLIQVHAQPAAAFHCELCDRAYCSRALLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHAGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHVACRALIECQKCGQSFTSYASLTKHKRFCDTAAAASVNLRGPMPQGLPQIPPLPNVGMNTPNNASPFPMYRGPALPLSYSTFAHHYPALFSAAAAACQPEFLNPLLFNVQGARIAAMEHELAMNANMAKQQEGRMSVKSIDSSTSIDDKKKELDYENSKRDGDMSDRTSPKSQSLYVKSPMSTEEVSQRQIPVMPMQTPIVPFNFLRDEVKRKSPFNFSLKLNNNNIQGKSVSPSLPKDLTKPVAKDDDKNSDYSDNEDDSKKDLGDQPLDLSVSRKQCDKESEVDNDDRSFRNSSVKSYSPPESPVGRNSKTPENETTDVDVEEVEPKREDSPPQLVSPPLAFPMPVHPQHNNSLIEAMYRPRFPSFHSASEAILNSSHSPYVPSPFNFLSPLLGTDGPDRQQSAYAAKFRELSAGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPGARTPPATSPHAPPSHPPHRPSALAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00943055;
90% Identity: iTF_00027994;
80% Identity: -