Aals021254.1
Basic Information
- Insect
- Agonopterix alstromeriana
- Gene Symbol
- -
- Assembly
- GCA_963924505.1
- Location
- OZ004688.1:2207561-2227304[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.044 2.8 9.0 0.3 2 23 216 237 215 237 0.96 2 20 0.072 4.6 8.4 6.1 1 22 244 265 244 267 0.88 3 20 0.0077 0.5 11.4 6.3 1 23 298 321 298 321 0.98 4 20 0.0047 0.3 12.1 1.8 1 23 325 348 325 348 0.96 5 20 0.41 26 6.0 0.0 1 16 367 382 367 384 0.85 6 20 0.38 25 6.1 0.0 1 16 408 423 408 425 0.86 7 20 0.0047 0.3 12.1 1.8 1 23 449 472 449 472 0.96 8 20 0.41 26 6.0 0.0 1 16 491 506 491 508 0.85 9 20 0.38 25 6.1 0.0 1 16 532 547 532 549 0.86 10 20 0.41 26 6.0 0.0 1 16 573 588 573 590 0.85 11 20 0.41 26 6.0 0.0 1 16 614 629 614 631 0.85 12 20 0.0047 0.3 12.1 1.8 1 23 655 678 655 678 0.96 13 20 0.41 26 6.0 0.0 1 16 697 712 697 714 0.85 14 20 0.061 3.9 8.6 0.7 3 21 737 755 736 756 0.92 15 20 0.0055 0.36 11.9 0.2 2 23 769 790 768 790 0.95 16 20 0.00014 0.009 16.9 0.1 3 23 811 832 809 832 0.95 17 20 8e-06 0.00052 20.8 1.8 2 23 842 863 841 863 0.97 18 20 3.1e-07 2e-05 25.3 2.4 1 23 869 891 869 891 0.99 19 20 7.7e-07 5e-05 24.0 2.7 1 23 897 919 897 919 0.98 20 20 5.6e-06 0.00036 21.3 1.8 1 23 925 948 925 948 0.98
Sequence Information
- Coding Sequence
- atgtccaATGTAGTTATGTGCAGAGTGTGTCTTGTGGCTGATGTGCGAATGCATGTTATAATAAATACTCCATTTCAAGACATATTCACGAAATTCACTGATATTACAATTTGTCCGGAGGATGGAAAGCCTGATCTTCTCTGCTACATCTGCCACACTCTGCTACGGAAATGCTTCAAATTCTACAATACGGCTTTGCAAGCCGATAAGCTGCTCACCCAGGTTGTACATGGCAGTGTTGTGAAAGCCGAAAGCGCATCCGTTCTCAACACACATACACAGAAACAACTGTGCGTGTCTCCCATAGAAGTGATCTCGTACAAGGACCCGCCGGAAACTGTCGGGGTCGTAGAAGTACCCGTGAAGGTAGAGATACCCATCAAACGTGAGGAGGTCAAGCAGGAGAAATGTGAAGAACCAGAACACTCTGACGTAGATGATAATGTATGGCAATCAGATTCGGACGACAACATACCTTTAAAGAACTTTAGCCTAAAGAAGAGCGAGAAAGGGAAAGTAAGATTGAAAAGAGAAGAAAGAGGTCGTATAACAGAGTTCGCCCGTGAAATAATCTTGACCAAAGAGCAACAACTGCAAGAATTGATGGATAGATCCAAGTCGGTGAACTATATCAACTCCCCGCTCAAGTGTGAACTCTGTTACAAGGGGTTTATTGATGTCAACGCGTACGAAAACCACCGAGACAAGCACGATGAGAAAAGCGGTGCCCACGAATGCGACGTGTGTCACATGCGATACAAGACCCAGCGGCAGCTGCGTACACACTGCGCCACCTCGCACTCGCGCCAGTACGCGTGCGTCAAGTGTACGCATCGCTCTCACACCGCTAACCAGGCGAGAGAGCACGAACAGTGGCACGACGGGTACACATACGAGTGCAAACTTTGCGGCCAGAAGTTTAGGAAACACACATCCTATTTAACACACAAACGAAAAAGACATCCGACCCAACATGTGTGTGCTATCTGTGGACACAGCTTCGTCGGCAGACACGGCCTCCTCATGCACCAGAGTAAAGCTCATCGACTCATTGATAAGGTATCTATACTAGACGCCAGTTACAGACATCCGACTCAACATGTGTGTGCTATCTGTGGACACAGCTTCGTCGGCAGACACGGACTCGTGCACCAGAGTAAAGCTCACCGACTCATTGACAAGGTATCTATACTAGACGCAAGTTACAGACATCCGACTCAACATGTGTGTGCTATCTGTGGACACAGCTTCGTCGGCAGATACGGACTCGTGCACCAGAGTAAAGCTCATCGACTCATTGACAAGGTATCTATACTAGACGCAAGTTACAGACATCCGACCCAACATGTGTGTGCTATCTGTGGACACAGCTTCGTCGGCAGACACGGCCTCCTCATGCACCAGAGTAAAGCACATCGACTCATTGACAAGGTATCTATACTAGACGCAAGTTACAGACATCCGACTCAACATGTGTGTGCTATCTGTGGACACAGCTTCGTCGGCAGACACGGACTCGTGCACCAGAGTAAAGCTCATCGACTCATTGACAAGGTATCTATACTAGACGCAAGTTACAGACATCCGACTCAACATGTGTGTGCTATCTGTGGACACAGCTTCGTCGGCAGATACGGACTCGTGCACCAGAGTAAAGCTCATCGACTCATTGACAAGGTATCTATACTAGACGCAAGTTACAGACATCCGACTCAACATGTGTGTGCTATCTGTGGACACAGCTTCGTCGGCAGACACGGACTCGTGCACCAGAGTAAAGCTCATCGACTCATTGACAAGGTATCTATACTAGACGCAAGTTACAGACATCCGACTCAACATGTGTGTGCTATCTGTGGACACAGCTTCGTCGGCAGACACGGACTCGTGCACCAGAGTAAAGCTCATCGACTCATTGACAAGGTATCTATACTAGACGCAAGTTACAGACATCCGACTCAACATGTGTGTGCTATCTGTGGACACAGCTTCGTCGGCAGACACGGCCTCCTCATGCACCAGAGTAAAGCACATCGACTCATTGACAAGGTATCTATACTAGACGCAAGTTACAGACATCCGACTCAACATGTGTGTGCTATCTGTGGACACAGCTTCGTCGGCAGACACGGACTCGTGCACCAGAGTAAAGCTCATCGACTCATTGACAAGCAACCAGAAGTAACGGAGCCCGCCTCAGACCGGCACTGCTCCCGCTGCGGCGTGCAGTTCGTGACGCGCCACGCGTGGCAGAGGCACGTGCTGTCTGCCGGCGCGAGGCAGGGCTGCAGCGATGACAGTTTGACGTGTCGGATCTGCGACGTGACGTTCCCGTCCCGCGTAGCACTAGTCACGCACTTCAAGGAGCATGAGCGATCTCTGCGCGCTACCAGGACTAGCATGCCCCGCGCTGTCGCGGTGCAACTCGCCTGTGATCAGTGCGGCGCAAACTTCGTGAACAGATCCAAGCTGCAGGCCCACGTCAAGAGGATCCACCTCGGAGTGAAGTATAACAAGAACATCGTATGCGAGGTGTGCGGCAAGAAATGTACCTCAAACGCGTCACTGAAGTACCACCAGCGCACACACACGGGCGAGAAGCCCTACCAGTGCAACACCTGTCCTAAACGCTTCTCTGATAAGAACCAGCTGCGGATACATACTAGAACACATACTGGTGAGCGTCCCTATTGCTGCACGGTGTGCGGGAAGAGATTCAGCCAAAAACCAGCCCTCAATAGACATTATAGGGTGCACACCGGCGACAAGCCGTATGTATGTCAGTTCTGCTCCAAAACGTTCACACAATCCAACTCGCTAAAACTCCACGTCCGCACCGTCCACCTCAAGATGACCAGCAAGAGGAAAGTGCACCCTGTCGCCATGCCGGACAAGGTCGAAGATACGCCAGTACACGCGTTATGA
- Protein Sequence
- MSNVVMCRVCLVADVRMHVIINTPFQDIFTKFTDITICPEDGKPDLLCYICHTLLRKCFKFYNTALQADKLLTQVVHGSVVKAESASVLNTHTQKQLCVSPIEVISYKDPPETVGVVEVPVKVEIPIKREEVKQEKCEEPEHSDVDDNVWQSDSDDNIPLKNFSLKKSEKGKVRLKREERGRITEFAREIILTKEQQLQELMDRSKSVNYINSPLKCELCYKGFIDVNAYENHRDKHDEKSGAHECDVCHMRYKTQRQLRTHCATSHSRQYACVKCTHRSHTANQAREHEQWHDGYTYECKLCGQKFRKHTSYLTHKRKRHPTQHVCAICGHSFVGRHGLLMHQSKAHRLIDKVSILDASYRHPTQHVCAICGHSFVGRHGLVHQSKAHRLIDKVSILDASYRHPTQHVCAICGHSFVGRYGLVHQSKAHRLIDKVSILDASYRHPTQHVCAICGHSFVGRHGLLMHQSKAHRLIDKVSILDASYRHPTQHVCAICGHSFVGRHGLVHQSKAHRLIDKVSILDASYRHPTQHVCAICGHSFVGRYGLVHQSKAHRLIDKVSILDASYRHPTQHVCAICGHSFVGRHGLVHQSKAHRLIDKVSILDASYRHPTQHVCAICGHSFVGRHGLVHQSKAHRLIDKVSILDASYRHPTQHVCAICGHSFVGRHGLLMHQSKAHRLIDKVSILDASYRHPTQHVCAICGHSFVGRHGLVHQSKAHRLIDKQPEVTEPASDRHCSRCGVQFVTRHAWQRHVLSAGARQGCSDDSLTCRICDVTFPSRVALVTHFKEHERSLRATRTSMPRAVAVQLACDQCGANFVNRSKLQAHVKRIHLGVKYNKNIVCEVCGKKCTSNASLKYHQRTHTGEKPYQCNTCPKRFSDKNQLRIHTRTHTGERPYCCTVCGKRFSQKPALNRHYRVHTGDKPYVCQFCSKTFTQSNSLKLHVRTVHLKMTSKRKVHPVAMPDKVEDTPVHAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -