Aals014675.1
Basic Information
- Insect
- Agonopterix alstromeriana
- Gene Symbol
- -
- Assembly
- GCA_963924505.1
- Location
- OZ004677.1:3913150-3920615[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.27 18 6.5 1.6 1 23 142 164 142 164 0.97 2 13 0.00084 0.054 14.4 2.9 2 23 173 194 172 194 0.97 3 13 0.047 3 8.9 7.4 1 23 199 221 199 221 0.98 4 13 0.00043 0.028 15.3 1.2 2 23 241 262 240 262 0.97 5 13 0.00061 0.039 14.9 3.0 3 20 271 288 269 291 0.93 6 13 6e-06 0.00039 21.2 1.8 1 23 297 319 297 319 0.99 7 13 1.4e-06 9.3e-05 23.1 1.6 1 23 325 347 325 347 0.96 8 13 1.2e-07 7.5e-06 26.6 1.5 1 23 353 375 353 375 0.96 9 13 1.4e-05 0.00092 20.0 0.4 1 23 381 403 381 403 0.97 10 13 0.00034 0.022 15.7 0.5 2 23 410 431 409 431 0.94 11 13 7.7e-05 0.005 17.7 5.7 1 23 437 459 437 459 0.98 12 13 1.2e-06 7.8e-05 23.4 0.4 1 23 465 487 465 487 0.98 13 13 5.9e-05 0.0038 18.1 1.3 1 23 493 515 493 515 0.97
Sequence Information
- Coding Sequence
- ATGGCTACCATAACTAACAAAAACTTCGATAGTTGCTGCCGTACATGTTTGAACGATGTCTCAAACAAAATGTATGATATTTTCGCCGAAAAGACAGATTCTGTGAACGCTGCTGAAATGTTATCATCGTGTACCTCGTTAAAGGTTGACAGTGAAGATATACTACCAAAAAAACTATGTGGCAGCTGCTACAACTGCCTCGTCAGTTTTTACGACTTTAGAAAGCTAGCAGAAAAAATAGACACAGAGCTAAGAAGTCAATTGGACAACAAAAATAGAATAGCCAAAGGAACAGAGTCcgaaacattatttttagaagTAAAACTTGAAGATGACTCTAAAAGTGTCGACTATGAAATGTCCCATGATGATTTTGAACCAGACGCTACAGTGAAAACAGAGGAATCTAATAATTTAAGCCCATATTTTTGTAATATATGCCTATATGACTTAAACAATTTCACAGACTTCAAAGAACATTATAAAATTCACACAGAGAAAgagaaatttaaattaaaatgtgaattCTGTGATAAAAAATTTAGGAAAATTACCAAATTGGAACAACACAGACTGAAACATTCGAACGAGCTATACACATGCTCGTTTTGTTCAGAAACATTCAGGCACCATTTCAAATACGTAAAGCATTTAGTCACTCATGGAAAAGTAGATGTGTCACAACCGGAAATAAATCAAAACGAAACGAACCAAAGCTTAGAATGTGATATTTGTTCCTCACATTTCAAATCAATGAATTCGTTAGCAGCTCATATGCGAAAACATGTAAAGAAAAATAGAGTGTTAGCTTGTTCTATAtgtgataaaatatttaaaaaagtaagcCACTTGAAAAGACATGAACTATGCCACGAGATTAATCGACCGTACAAATGTTCTCAATGCCCAAAGAGATTCAACACGGATAGTCTTCTCAAGGAACATTTAAACAAACACAATGGAATAAAACCCCATGCATGTCCGATGTGTCCTAAATCATTTGCCCATCTGTCGACTTTGACGACTCATATAAAAATTCATACGAGGCAGAAACCATTTTTATGTCCGACTTGTGGAAAGAAGTTTGATTCTAGTACTAATTTGAATCAGCATATGAGGAGACATATGGGTCTGAAGTTATTTGCCTGCAATTTGTGCCCTAGGAAATTTGTTAGTAAAGGAGAACTAAAGTCACACACAATAACGCATACGGGTGAACGTTCGTGGACGTGCGACGAGTGTGGGTCCTCGTTCACTAAGCGCAGCTCGCTCGGCAAACACAAGCTTGGCCACGCCGGCATCAAACCGCACCAGTGCGACGCATGCTCTATGAAGTTTTCAACTAAGGATCACCTGAAGCGTCACTACCGCATACACACGGGCGAGAAGCCCTACCAGTGCGACATCTGCGAGCGAGCCTTCACACAGAGCAACGATCTCGTCAAGCACCGACGCGCGCACCTCGGCGACAAGTTGTATAAATGCACGGAATGCACCGAGGCCTTCCGTCTTCATTCAGAACTTAGGCAGCACATATCAGCGCACTTTATAACATCACGACTTGTCGCTATGACGGCCAACAAGCAGACTGTGGTTGACAAAAGTAACGCTCTTAAcggtgatatacagggtggagAAATAGGTATACAGGAAATACAGGATGGGTTGATTCAACTTAATGAGAAATGA
- Protein Sequence
- MATITNKNFDSCCRTCLNDVSNKMYDIFAEKTDSVNAAEMLSSCTSLKVDSEDILPKKLCGSCYNCLVSFYDFRKLAEKIDTELRSQLDNKNRIAKGTESETLFLEVKLEDDSKSVDYEMSHDDFEPDATVKTEESNNLSPYFCNICLYDLNNFTDFKEHYKIHTEKEKFKLKCEFCDKKFRKITKLEQHRLKHSNELYTCSFCSETFRHHFKYVKHLVTHGKVDVSQPEINQNETNQSLECDICSSHFKSMNSLAAHMRKHVKKNRVLACSICDKIFKKVSHLKRHELCHEINRPYKCSQCPKRFNTDSLLKEHLNKHNGIKPHACPMCPKSFAHLSTLTTHIKIHTRQKPFLCPTCGKKFDSSTNLNQHMRRHMGLKLFACNLCPRKFVSKGELKSHTITHTGERSWTCDECGSSFTKRSSLGKHKLGHAGIKPHQCDACSMKFSTKDHLKRHYRIHTGEKPYQCDICERAFTQSNDLVKHRRAHLGDKLYKCTECTEAFRLHSELRQHISAHFITSRLVAMTANKQTVVDKSNALNGDIQGGEIGIQEIQDGLIQLNEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00027988;
- 90% Identity
- iTF_00027988;
- 80% Identity
- -