Basic Information

Insect: Agonopterix alstromeriana
Gene Symbol: -
Assembly: GCA_963924505.1
Location: OZ004689.1:5549519-5554338[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.04 2.6 9.2 0.3 1 22 5 26 5 28 0.84

2 21 0.001 0.065 14.2 0.3 3 23 58 78 58 78 0.99

3 21 0.0034 0.22 12.5 1.2 2 23 101 122 100 122 0.97

4 21 0.00086 0.056 14.4 0.7 1 23 126 148 126 148 0.96

5 21 0.013 0.85 10.7 0.9 1 23 209 232 209 232 0.90

6 21 0.0035 0.23 12.5 0.9 3 23 262 282 262 282 0.99

7 21 0.0049 0.32 12.0 1.7 1 23 304 326 304 326 0.99

8 21 0.0048 0.31 12.1 0.1 1 23 330 352 330 352 0.95

9 21 0.00049 0.031 15.2 0.2 1 23 357 380 357 380 0.96

10 21 0.0034 0.22 12.5 4.6 1 23 386 409 386 409 0.96

11 21 4.8e-05 0.0031 18.4 0.2 1 23 416 439 416 439 0.98

12 21 5.8e-05 0.0038 18.1 0.9 1 23 445 467 445 467 0.95

13 21 4.3e-07 2.8e-05 24.8 1.3 1 23 473 495 473 495 0.99

14 21 2.2 1.4e+02 3.7 4.3 1 23 630 653 630 653 0.94

15 21 0.039 2.5 9.2 0.1 1 23 724 746 724 746 0.96

16 21 0.00043 0.028 15.4 0.2 1 23 750 772 750 772 0.98

17 21 0.014 0.93 10.6 2.0 1 23 777 800 777 800 0.94

18 21 0.016 1 10.4 0.3 2 23 807 829 807 829 0.92

19 21 0.035 2.2 9.4 6.3 1 23 836 859 836 859 0.96

20 21 6.5e-05 0.0042 17.9 4.9 2 23 866 887 865 887 0.96

21 21 3.9e-05 0.0025 18.6 0.6 1 23 893 915 893 915 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.04	2.6	9.2	0.3	1	22	5	26	5	28	0.84
2	21	0.001	0.065	14.2	0.3	3	23	58	78	58	78	0.99
3	21	0.0034	0.22	12.5	1.2	2	23	101	122	100	122	0.97
4	21	0.00086	0.056	14.4	0.7	1	23	126	148	126	148	0.96
5	21	0.013	0.85	10.7	0.9	1	23	209	232	209	232	0.90
6	21	0.0035	0.23	12.5	0.9	3	23	262	282	262	282	0.99
7	21	0.0049	0.32	12.0	1.7	1	23	304	326	304	326	0.99
8	21	0.0048	0.31	12.1	0.1	1	23	330	352	330	352	0.95
9	21	0.00049	0.031	15.2	0.2	1	23	357	380	357	380	0.96
10	21	0.0034	0.22	12.5	4.6	1	23	386	409	386	409	0.96
11	21	4.8e-05	0.0031	18.4	0.2	1	23	416	439	416	439	0.98
12	21	5.8e-05	0.0038	18.1	0.9	1	23	445	467	445	467	0.95
13	21	4.3e-07	2.8e-05	24.8	1.3	1	23	473	495	473	495	0.99
14	21	2.2	1.4e+02	3.7	4.3	1	23	630	653	630	653	0.94
15	21	0.039	2.5	9.2	0.1	1	23	724	746	724	746	0.96
16	21	0.00043	0.028	15.4	0.2	1	23	750	772	750	772	0.98
17	21	0.014	0.93	10.6	2.0	1	23	777	800	777	800	0.94
18	21	0.016	1	10.4	0.3	2	23	807	829	807	829	0.92
19	21	0.035	2.2	9.4	6.3	1	23	836	859	836	859	0.96
20	21	6.5e-05	0.0042	17.9	4.9	2	23	866	887	865	887	0.96
21	21	3.9e-05	0.0025	18.6	0.6	1	23	893	915	893	915	0.99

Sequence Information

Coding Sequence: ATGAAGAATTTATACTTATGTTTCTATTGCGATCAGCAGTTCTCTGACCCGACCGAACTGCGGCCGCACAATTCCATTGAACATTCCAATCAAACATCAAAAGAAATAACAAACGCTCTatcgaaattacaaaaatacgaaTTGGTAAAAGTGGATGTAACTGATGTCGGATGCAAGATCTGTAATGAATCTATAAGTAATTTGGCTTCGTTAAAAACGCACATGTCTATACACGACAAAAAGTTAGATCTCGAATCGTACAATGGAATTTTACCCTTCAAAGTTACTAAGGAAGACTTAAAATGCGCATTGTGTGAAGAAAAGTACGAAGATTTCAAATCTTTAAACCATCACATGAACGTTCATTTTCAAAACTTCATTTGTGAACAATGCGGCACTGGATTCGTAACTCAAAAACGTTTGAAAACTCATTCCCTCTCACACGAAACTGGTCAGGATGAGCCATCAACCCAGAGTTATACTGAAGATCACGGCCAAGAAACTAAGTCGAAAAGGAAACACGCACCTGTAAGGGATATAGATGACAGAAAAACTAGAATAAAACACGCTACAATACTTCTAGAAAACTCGAAAATATGCCCCTTTAGATGGATGAAGAATCTATACTTGTGTTTCTATTGCGACCTGCAGTTCTTTGATCCGGCTGATCTTAGACATCACAATTCCATTGAACATTCTAAAAACTCTAGTGTagaagtcaaattttctttgtcgaaaTTGAAAAAGTTTGAATTAGTTAAAGTGGACATTACGGACGTCGGTTGCAAAATCTGTGACGAAACCATTACAAGTTTCGAGTCATTGAAGACCCATCTACAAAAGCACGAAATATATATAAAACCCGAATCATGCGACGGAGTGTTACCTTTCAGAGTCGCAAAGAACGACTACAAATGTGCTTTGTGCGAAGAAAAATACGATGAATTCAAGTCTTTGAATCATCACATGAACGTGCACTTCCAGAACTTCATTTGTGAACAATGCGGGGCAGGATTTATTACCCCCGAACGTTTAAGGACCCACGCTTTTTCTCACGAAACGGGTTCCTTCCCTTGCGAGGATTGTGACAAGATATTCCGTTCATCAAACGCTAAGAACGAGCATTACGCGACTGTACATAGGAAAGTTAAAAGACATCGTTGTCCACACTGCACGGAAACTTTCCGGAACTACTTTCAACGGAACAAACACATTGCATCAGTTCATAATTTGAAACTAAAAGAATTTAAATGCACTATGTGTCCAAAAGTGTTCACGCTTAGTGGAAAACTAGGAGTCCACGTTAGAACggtccatttgaaattaaagcgTCATGCATGTGATGTTTGCGAGTGGAAGTTTTACTCTAAATCTGAATTGAAAGAGCACATGGTACGCCACGGCGGAGAAAGAAAGTTCCAGTGTAGTATATGCAAGAAAGCGTATGCTCGAAAGTACACCTTGCGGGAACATATGAGGATACATGATAACGACAGGAGATTTGTTTGTACGATCTGCGGATCGGACTCGCCAATATTACCAGAAATACAGCCGCAGAGAAAAAGGATCGTCCCGTTATTCCAAGTGGCTTATGATCGAAGCTTATGTAGACCTCTTGGCACTGTAGTGGACTTCAGCAAACTACGCTCGAAGTGTTTCGCCAGAAAAACTACTCCAAAAGAGTTTACACCATCCCGTAGCGCCTCGCCCATGTCGCTCGCCAGATCTCCGACACCACCTCCCATCTTAGATGATCTAAATTTAAATCCACCAATAGAAGTCCAGCCTAAAGAGATAGCACACAAAAAACTACCTGATATCCGACGAAATGCTTTGACGGTATTCGAATTTTCCACAGCATACCCCTTCGTTTAcggaaacaataaattcaaatgTTTCGTGTGCTCACAACCGTTTTTAGAAACTTCTTTATTGAGACAACACATGCACGATTGTCATACTTTCGCATCTTTGAAAAGGTTAGTCAATAATCGTAGAGAAAACGTTTTGAAAGTAGATGTGAGTGAACTAATTTGTAAATTATGCTCTGTGAGGCCTAAAGATTTGTTAGAGTTAAAATTTCATTTGAAAGATGAACATGGTAAAGCTATAGACCCAGATTTGCAAGATAACATGATACCGTTCAAAATAGACGGTGGAGAGGGTTCGTACCAGTGCGTTATGTGCGACGAAAGCTTTATCAAAGTACGCATCCTCGTCATCCATATGAGCGTTCACTTCAATAACTACAGCTGCGAAATTTGCGGATCGGGTTTTATGACATTAAGGCTTTTGAAGAAACATCTAGAAGTTCACGAAAATGGAAATTTCCCTTGCGACAAATGCAATAAAATTTTCAGTACAACTCACAAGCGTTCGCTTCATGTCAGAGGGGTTCATTTGAAACAGTATCCCCGTCGCTGCCCAATCTGCCCGGAAAGATTTAATTCGAATTATAGAAGGACTATACATCTGCAGGATGTCCATAATCAGTCAACTAGGGTGCATAAGTGTGAAACTTGTGGACGGGCTTTCAATCTCAAATACCATCTCATTTGTCATACTCGATCGGTACATCTGCAGGAGAGGAATCAGCAGTGCGATATATGCCATCAAAGGTTCTGTAATAAAGAAACTCTGAAGAGGCACATGGTTATACATACGGGAGAGAAGAATTACAAGTGCGAAGTTTGTGGCATGGCGTTCTTGAGGAGAAAGAATTTGAAGGATCATTTGCGGTTGCACGATATAGTTTAG
Protein Sequence: MKNLYLCFYCDQQFSDPTELRPHNSIEHSNQTSKEITNALSKLQKYELVKVDVTDVGCKICNESISNLASLKTHMSIHDKKLDLESYNGILPFKVTKEDLKCALCEEKYEDFKSLNHHMNVHFQNFICEQCGTGFVTQKRLKTHSLSHETGQDEPSTQSYTEDHGQETKSKRKHAPVRDIDDRKTRIKHATILLENSKICPFRWMKNLYLCFYCDLQFFDPADLRHHNSIEHSKNSSVEVKFSLSKLKKFELVKVDITDVGCKICDETITSFESLKTHLQKHEIYIKPESCDGVLPFRVAKNDYKCALCEEKYDEFKSLNHHMNVHFQNFICEQCGAGFITPERLRTHAFSHETGSFPCEDCDKIFRSSNAKNEHYATVHRKVKRHRCPHCTETFRNYFQRNKHIASVHNLKLKEFKCTMCPKVFTLSGKLGVHVRTVHLKLKRHACDVCEWKFYSKSELKEHMVRHGGERKFQCSICKKAYARKYTLREHMRIHDNDRRFVCTICGSDSPILPEIQPQRKRIVPLFQVAYDRSLCRPLGTVVDFSKLRSKCFARKTTPKEFTPSRSASPMSLARSPTPPPILDDLNLNPPIEVQPKEIAHKKLPDIRRNALTVFEFSTAYPFVYGNNKFKCFVCSQPFLETSLLRQHMHDCHTFASLKRLVNNRRENVLKVDVSELICKLCSVRPKDLLELKFHLKDEHGKAIDPDLQDNMIPFKIDGGEGSYQCVMCDESFIKVRILVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHENGNFPCDKCNKIFSTTHKRSLHVRGVHLKQYPRRCPICPERFNSNYRRTIHLQDVHNQSTRVHKCETCGRAFNLKYHLICHTRSVHLQERNQQCDICHQRFCNKETLKRHMVIHTGEKNYKCEVCGMAFLRRKNLKDHLRLHDIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -