Aals017059.1
Basic Information
- Insect
- Agonopterix alstromeriana
- Gene Symbol
- -
- Assembly
- GCA_963924505.1
- Location
- OZ004680.1:7193487-7196085[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-06 0.00096 19.3 0.0 4 35 11 41 8 48 0.84 2 2 2.6e-09 2.3e-06 27.7 0.0 4 39 240 276 238 282 0.88
Sequence Information
- Coding Sequence
- ATGGCGCCAAAAAAAGACTATACTCCCCTTCAAATGGGAAAAGCCATAGAGGCTGTGAGAAAAGGTGAGAAAATTGCAACAGCTGCGCAAATGTTCGGCGTGCCCAGAGTGACTTTATACAACAAGATAACAGGAAAAAGTCCGATAGAATGTTCTATGGGTCCAAGTAGCTATTTACCCAAAGAAGAGGAAGACATTTTGGAACTGTGGATTATCAATATGAATGATATGTACATTCCGATAACAAAGGATGAATTACTTGACAGTGTTCAAAAGATTATTGCTGATAAGCACCAAGCTACTCCATTCAAAGACAACAGACCCGGCAAAAAGTGGTACAACCTGTTTTTAAAACGTCATCCCACAGTTTCTGAGCGAACAGCGCAAAACTTAAACACCGCACGTGACGATGTCACTGAAGAGGGTATACATAAATGGTTTCAAGAAGTAGATGCTTACTTGCAGGAAAAGCAACTTAAGACCGTCACTGAAGACCCAGCTAGGGTCTTCAATACCGACGAAAGTGCTTTCTATTTATCCCCAAAAGCTGGAAAAGTCCTAGCCAGGAGAGGGGACAAGCACATTTATCAGTCATCCGGTAACGAGAAAGACAATTTAACCGTATTGATTACTGGCAACGCTGCAGGTGAACTGGCACCTCCAATGGTGATGGTGCGACattatgaaagaaaaaaagTGAAAGGTTATCAGGACTCAGATTTATTAAAAGCAATGGATGACGTAAAAAACAATTGCATGACTATAACCCAAGCTGCAGAGGTGTATGGAATACCCAGAACTACAATTCAAACTAGAATGAAAAGCTCTCATGATAGGGCTGGCAGACCAACAGTGTTTTCAGCGGAATTTGAAGCACGAATGGCAAATTGTCTTCATATTATGGAAAGAAATGGCTTCCCGTTAAGTAGGAAAGAAGCATCGACCTTAATTTCAGAGTATGTGCGCCAAAATGGCATTGTAACACCATTCAAAAACGATTTTCTGGGAAAAGACTGGTTTCAATACTTCCAGAAACGGAATAACCTTTCTATCAAGAAACCACAAAATGTTGAAATAACACGGCGAAAGGCTTGCGATCCGTTTGTGATTTACGGATATTTTGATATGTTAGAAAGGGTGATGGGGGAGTTAGACTTGAATGATAAGCCGCAACAAATATACAATCTCGACGAAACCTCAATATGCGATGATCCTGTCAAAGGAAAAGTAGTGGGGAAAAAAGGCTATCCATCGACGAGAACAACAAGCGGACCTGGGCGCAACAACACCAGCGTACTTCTAGCAACCAACGCCTGGGGTGAAAAAGTTCCGCCCCTAATTGTATTTTAG
- Protein Sequence
- MAPKKDYTPLQMGKAIEAVRKGEKIATAAQMFGVPRVTLYNKITGKSPIECSMGPSSYLPKEEEDILELWIINMNDMYIPITKDELLDSVQKIIADKHQATPFKDNRPGKKWYNLFLKRHPTVSERTAQNLNTARDDVTEEGIHKWFQEVDAYLQEKQLKTVTEDPARVFNTDESAFYLSPKAGKVLARRGDKHIYQSSGNEKDNLTVLITGNAAGELAPPMVMVRHYERKKVKGYQDSDLLKAMDDVKNNCMTITQAAEVYGIPRTTIQTRMKSSHDRAGRPTVFSAEFEARMANCLHIMERNGFPLSRKEASTLISEYVRQNGIVTPFKNDFLGKDWFQYFQKRNNLSIKKPQNVEITRRKACDPFVIYGYFDMLERVMGELDLNDKPQQIYNLDETSICDDPVKGKVVGKKGYPSTRTTSGPGRNNTSVLLATNAWGEKVPPLIVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -