Basic Information

Insect: Agelastica alni
Gene Symbol: -
Assembly: GCA_950111635.2
Location: OX467719.1:22026759-22043048[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.8 1.4e+03 1.7 5.4 2 23 24 49 24 49 0.74

2 9 3.5 8.7e+02 2.4 4.6 3 23 131 155 130 155 0.70

3 9 0.0026 0.63 12.2 1.4 1 19 520 538 520 543 0.94

4 9 0.00033 0.08 15.1 0.5 1 22 562 583 562 583 0.95

5 9 4e-06 0.00097 21.1 2.8 1 23 592 614 592 614 0.98

6 9 1.5e-05 0.0036 19.3 5.4 1 23 620 642 620 642 0.98

7 9 1.2e-05 0.003 19.5 0.3 1 23 655 677 655 677 0.96

8 9 6.6e-05 0.016 17.3 8.4 1 23 683 705 683 705 0.98

9 9 3.5e-06 0.00086 21.3 0.5 3 23 713 733 711 733 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.8	1.4e+03	1.7	5.4	2	23	24	49	24	49	0.74
2	9	3.5	8.7e+02	2.4	4.6	3	23	131	155	130	155	0.70
3	9	0.0026	0.63	12.2	1.4	1	19	520	538	520	543	0.94
4	9	0.00033	0.08	15.1	0.5	1	22	562	583	562	583	0.95
5	9	4e-06	0.00097	21.1	2.8	1	23	592	614	592	614	0.98
6	9	1.5e-05	0.0036	19.3	5.4	1	23	620	642	620	642	0.98
7	9	1.2e-05	0.003	19.5	0.3	1	23	655	677	655	677	0.96
8	9	6.6e-05	0.016	17.3	8.4	1	23	683	705	683	705	0.98
9	9	3.5e-06	0.00086	21.3	0.5	3	23	713	733	711	733	0.97

Sequence Information

Coding Sequence: ATGTCGGCTGTACGGAGATCAGCTATATGGAATGTATTTACGGAAACCCATAAATCTGATTTCATTGCCACTTGCAATATATGTTCTCAGGAATTTTCTTATAGATCAACGAccacaaatttaatgaaacatCTTCAAAGAAAGCATCCTGGTGTTAGTGTAGACTTAAATTCAGTTATTCAAAAACCTAAGGCTGGAACTATACCAAAAGAAGTTGAAATTGTCATCGAGAGACAGTTAGAAAATGAGTGTGAGGTTAAAACATTTAAAGTGGAAGTTCAACCAGTTTCAGAAGAAAATTGtgattttattgtattacaatCTAACAAAGAAACAGCTCACATGtggtatttttttactaaaatacagGATTCTGACTCTATAGCTTCTTGTAATCTTTGTCAGAAGGAGTTTTCTTACAAGACAACTACTTGGAATTTAAAGAAACATCTAGATAGAAAGCATCCTGAGCAGTTGGCGGATGTGCCTCAAAATCAACAGAATTCCGTTTCTCATGAACAATCATTCTTGTATACATCTACAGATCCTGAACAACAAAATATTACACTAGCTGATTCTAAAGTGTTTGAATCAAATGACAACAATTCTAATCAACAAATAGATAACGTTGATGATGACATCGACAATGATTTCTGGAATTTGGATAACAATTCTGATGATGATCCAGATTTTAGACCTTCTCCTACATTTGATGATGAAATGGAAGTAAAAAGTACAAATACCGGTAAAAAGCGGTCTCAAATCTGGAACGTTTTTACTGAAAAACCTATGTCTGATTGTGTGGCCATCTGCAACGTATGTAATCAAGAGTTTTGCTATAGAAGTACCACAAATAACCTTAAAAAGCATTTTCAAAGGAAACATCCACATATGACGTTTGACAACAAGATAGAACGAGTTGTtgagGTAGATAATATACAAAGTAATGtaaaaaaagaatacaaaaGTTGCGGAGATGATGAGGACAAAGATTCATCTGATGAAGTTGCCGTTAATAATAAGAGGAAACGCTCACAAATTTGGAATTATTTTACGAGAAAAAAACCTGGTGAATACGTAGCCACctgtaatatttgtaaaaaagaatTAGGATTTAAATCTACGACCTcaaatttaaagaaacattTAGACAGAAAGCATCCTCAAATTGAAATCAAGTCCGAACATGAAGTGGAAATGAAAAAGAGTACTCCAGAAGTTGCTGTTAAAACATGTATGATTTGTTTACAAAATGATCAATCAGAACCTACAGAATTTGTACAAATAAATCATTCTGATTCGGaagaaaaaagttatatgaCGAAAATTCAAGAGATCATGAATCAGTCTGTGGTTATTGATGAATCACATGTGATTTGCCAGCCATGCATCGATGATTTggaaaaagttattaaatttaaagaaaaaatttccaGAGCATTTGAATTCTGGACCAAGGTTGAAGCAGAACCTGAAAATGACTCTTACAATAATTATGAGGATGAGGCTAATCAATCAGatTACAGTGACTTGGAAGATGGTGAAAGTTTGGCCAAGTTTACCTGTAGCAAGTGCAACAAAGTTTTTCCATCTTCTTCTGTTATGCTTAAGCACAATTGCGGACAATCATCCAGGAAAGAAAAATCTTTCGGGAAGAAGGAGTCAAATAATAAAGACACTAAGTTTTATTGTGAACTTTGTGGTAGGGCCTTCAACATTAAGTGGAAATTAAATAAACACCTAAAAAGaTGCCAGGATAACGCGTCAAAACAATTCGTCTGCACCTTATGCAATAGAGTCTTCAAAAAAGCCTATCATCTCCGAGAACACATGTCATCACATACAGGAGAACGAAATTACAGTTGCAATTTGTGCGGCAAAACTTTCCAGAGATCATCGTCGAAACACAAACATATGCGCAGTCACAACGCGAAACCTggtgaaaaatcaaaaaagacTCCATTTTTATGTACTATATGTGGCAAAAGTTTTCCTTACAGTAATGGAGCATCCAGGCATATGAGGGTACATCTAGGAGAAAGGAGGCACCAATGtcacatttgtttaaaaaggtTTAGTCAGACTACGCATTTGAAGGTCCACCTTCGCACCCATTCAGGCGAAAGACCTTACGGTTGTATGATTTGCGGAAGAACGTTCTCTCTAAATGCAAGTTTACGAAAACACATGCGACTGCACGTTGGGCCGGGAGATTTCGTTAAGATAGTAAAAAATTTAGAGACAAGTTTAGCTCCAACGGAGGTTGTGACGGATGATGGAATGCATATTTTGACAGCTGTACCGCATGATATCAATATGGAGGAAAACCAATGTATTGCTTAG
Protein Sequence: MSAVRRSAIWNVFTETHKSDFIATCNICSQEFSYRSTTTNLMKHLQRKHPGVSVDLNSVIQKPKAGTIPKEVEIVIERQLENECEVKTFKVEVQPVSEENCDFIVLQSNKETAHMWYFFTKIQDSDSIASCNLCQKEFSYKTTTWNLKKHLDRKHPEQLADVPQNQQNSVSHEQSFLYTSTDPEQQNITLADSKVFESNDNNSNQQIDNVDDDIDNDFWNLDNNSDDDPDFRPSPTFDDEMEVKSTNTGKKRSQIWNVFTEKPMSDCVAICNVCNQEFCYRSTTNNLKKHFQRKHPHMTFDNKIERVVEVDNIQSNVKKEYKSCGDDEDKDSSDEVAVNNKRKRSQIWNYFTRKKPGEYVATCNICKKELGFKSTTSNLKKHLDRKHPQIEIKSEHEVEMKKSTPEVAVKTCMICLQNDQSEPTEFVQINHSDSEEKSYMTKIQEIMNQSVVIDESHVICQPCIDDLEKVIKFKEKISRAFEFWTKVEAEPENDSYNNYEDEANQSDYSDLEDGESLAKFTCSKCNKVFPSSSVMLKHNCGQSSRKEKSFGKKESNNKDTKFYCELCGRAFNIKWKLNKHLKRCQDNASKQFVCTLCNRVFKKAYHLREHMSSHTGERNYSCNLCGKTFQRSSSKHKHMRSHNAKPGEKSKKTPFLCTICGKSFPYSNGASRHMRVHLGERRHQCHICLKRFSQTTHLKVHLRTHSGERPYGCMICGRTFSLNASLRKHMRLHVGPGDFVKIVKNLETSLAPTEVVTDDGMHILTAVPHDINMEENQCIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00026237;
90% Identity: iTF_00026237;
80% Identity: iTF_00026237;