Aaln048849.1
Basic Information
- Insect
- Agelastica alni
- Gene Symbol
- prdm10
- Assembly
- GCA_950111635.2
- Location
- OX467718.1:10161212-10172198[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3e-05 0.0074 18.3 0.1 2 23 451 472 450 472 0.96 2 10 0.00087 0.21 13.7 2.7 1 23 540 562 540 562 0.95 3 10 1.2e-05 0.0029 19.6 1.0 1 23 573 595 573 595 0.96 4 10 1.1e-05 0.0028 19.7 1.0 2 23 607 628 606 628 0.97 5 10 0.14 35 6.8 3.1 2 23 637 658 636 658 0.94 6 10 0.028 6.8 9.0 0.6 1 20 665 684 665 687 0.91 7 10 0.001 0.25 13.5 2.1 1 23 693 716 693 716 0.96 8 10 0.0014 0.35 13.1 0.6 3 23 723 743 722 743 0.99 9 10 0.0018 0.43 12.8 3.6 1 23 749 772 749 772 0.88 10 10 5 1.2e+03 1.9 0.7 1 14 806 819 806 822 0.89
Sequence Information
- Coding Sequence
- ATGGATACCATTATTGAAGGGTCTCAAAATGAAAGGGGCCAAATACAAGATATTAGTATTGTAGATACAACTAATTGGAATACACAAGCCgaagaaattgtaaataatcCTACACTGCTTTATATAGCTGTTGAATATGTAAAAGACTATAAAGTAGGTGACCCAAATACAAATGTTTCAACTCAAGCTGAAGTGTTTGCTGACTTTGATCCGCACATTAGTCCTTTGGATCCTAATATGAGCTCTGTAGCAAGCTATAGCCCTGTCTATAATGATTCATCTGCAGAATATAACCCTGTAGTAATTCACCAGCTTGTTACACAAGCTGGAACTGTGCAAAATGAACAATACATTAGTAATATAAATGCAGCTTCACTAGATACAATACCTACCGTTCTTTGTAATAGAAATATTAGAGGAGTTAGCAATGAATACTTGCAAATGGTAAACCAAAATGAAGCCAATATTGTAAATACCTCTAGCTCTGAAGCTTTACAATTGGTACCTGAAAGAGAACAGAAAGTAGAGCTTTTAATTACTGATGAAACAACAGgaaTATCTTATAGCGTCGATGCACAAGAATTATTAGTAGAGCCCTGTCTTCAAGATGATCAACAACTTTTGGAATCTCTAGCTCCTGATCCTATTCTAGAATCTGATTTTCTTTCTTTAGATGCTAGAACATTAAAGTCGGAGTTAAATGATGACTTGGATTTTTGTAGTAACGAAATAGCCTCTGTTAATACAACAGCTGTACATAATTATATCGATAACTTGTCAGAATCTACTATTAGCAAATCTAATACAATTGGTTCATTTAAAATGGAAACTAGACAAAAACTCAAGAATGATTTAGATTCTGAAGATCAGCTGTTGTCTTGTGTGTACAGTATTACTGATAAACCTATTTTGACAAGAGCTAAAGCAACTCTTCCAGAATCGTACTTAATTGTTGGCAGATCTAATGAAGAGGTGGcagtttttgcaaaaaaagcAATTCCAAAAAGGACACAATTCGGGCCACTTGAAGGTGTTCTTGTTCCGGTAAATGATGATCCGGTTGTTATGAAAAAAATCGAAGAAAGGAagttagtattttttattgaaaatgaagGTTCTCTTTACAGGATTGATGCTTCTGATGAAAatacTTCCAATTGGATGATGTTTGTTAGAAAAGCGACATCATTCGAAGAGCAGAATTTAGTTATCACCCAAGAGAATAATTTCATATATTTTACTTCAACCACACTTATCATGCCTAAGCAGGAGTTAAAAGTAGGGTACAGTAACATATATGCACAATATTATGATTTACCAATGTTGCAACCTTTACAAGAACTTTCTTGGCCATGTTAcgaatgtccaacaaaattcgaATCTTCAGATGAGTTACAAAGACACTTGGATACACACGAcaaagaaagagaagaaaacattaaaccaaaaaaaaaaaaactcgttttcttcaaaaagtttcattCTGATACAGTAGAGTGTCAGGTTTGCAACGAGCTATTTTTCCAatacaattacaattttttaaaacttcataTCATTCAGAAACATCATCTACTGAAAGGGACCGTAGAAGAATATTTTACAATAGTAAACAATTTTAAATGCGATACGTGTAATACTAGTTTTAAatcagaaaatttattaaaaatacacaattttaaacATGATCCCGATTCGTCTGAAGAACAAAGAAACCATGTGTGTCCAGAATGTCAAAAGAAGTTTCCAACTCAACGTCAACTGGTCCAGCACGTGATGCAACATGCCATCATTACTGACCcgaaaccaaaaaaaatcaagtgTTCCATTTGTTACAAGATTTTTTCCCACCCAGAAAGGTTACAGAAACACATGATCGTCCATGGTTCAGATGACAATAAACCTTTGCAATGCAAGACTTGTAATAAGAGGTTTCTTAACAACTCGGCCTTATCGTGTCATGTTAAAATCCACTATACTGGAAAAAAGGCATTCGAATGTCCCATATGTAAAGAGAGGTTCGACCATGTTTTGAAACTTAAACTCCATGTTCCGAATCATTGTCATAATAACTCTTTCACGTGTCCAtattgtaagaaaatatttaaaaagtatagtATTATCAGAAAACACATAAGAGCTTTTCACTGTGAAAGAACACACGGTTGCACCATTTGTACGAAACTATTTCCAACTCtagacaaattaaaaatgcattTGCTAAAACACTCTGATCATAAGGAATTTTTATGTGCTAATTGcggaaaacaatttaaaagaaaagacaAGCTTCAAGAACATTGTAAACGAATTCATTCCGAAGAAAGAGAAAATACTATTCCCAAGGAGCAAAATATGAAAAAGATTAAGAAGTTTATGCCAAAGGTGGAACCTACTGATTTTCATAGGTTTATCTACAAATGCCACAGCTGTTTAGTTGGATTCAAGAGAAGAGGTAAGCAAcgcattagttttaaaatatatccaCTAGAAAAGTAA
- Protein Sequence
- MDTIIEGSQNERGQIQDISIVDTTNWNTQAEEIVNNPTLLYIAVEYVKDYKVGDPNTNVSTQAEVFADFDPHISPLDPNMSSVASYSPVYNDSSAEYNPVVIHQLVTQAGTVQNEQYISNINAASLDTIPTVLCNRNIRGVSNEYLQMVNQNEANIVNTSSSEALQLVPEREQKVELLITDETTGISYSVDAQELLVEPCLQDDQQLLESLAPDPILESDFLSLDARTLKSELNDDLDFCSNEIASVNTTAVHNYIDNLSESTISKSNTIGSFKMETRQKLKNDLDSEDQLLSCVYSITDKPILTRAKATLPESYLIVGRSNEEVAVFAKKAIPKRTQFGPLEGVLVPVNDDPVVMKKIEERKLVFFIENEGSLYRIDASDENTSNWMMFVRKATSFEEQNLVITQENNFIYFTSTTLIMPKQELKVGYSNIYAQYYDLPMLQPLQELSWPCYECPTKFESSDELQRHLDTHDKEREENIKPKKKKLVFFKKFHSDTVECQVCNELFFQYNYNFLKLHIIQKHHLLKGTVEEYFTIVNNFKCDTCNTSFKSENLLKIHNFKHDPDSSEEQRNHVCPECQKKFPTQRQLVQHVMQHAIITDPKPKKIKCSICYKIFSHPERLQKHMIVHGSDDNKPLQCKTCNKRFLNNSALSCHVKIHYTGKKAFECPICKERFDHVLKLKLHVPNHCHNNSFTCPYCKKIFKKYSIIRKHIRAFHCERTHGCTICTKLFPTLDKLKMHLLKHSDHKEFLCANCGKQFKRKDKLQEHCKRIHSEERENTIPKEQNMKKIKKFMPKVEPTDFHRFIYKCHSCLVGFKRRGKQRISFKIYPLEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -