Basic Information

Insect: Agelastica alni
Gene Symbol: -
Assembly: GCA_950111635.2
Location: OX467708.1:12478914-12488770[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.3 75 5.7 0.3 2 23 105 126 104 126 0.95

2 14 0.14 36 6.7 3.0 1 23 132 154 132 154 0.97

3 14 0.0017 0.42 12.8 1.9 1 23 160 182 160 182 0.91

4 14 9.7e-05 0.024 16.7 3.6 1 23 188 211 188 211 0.98

5 14 2.4e-05 0.0058 18.7 3.6 1 23 223 246 223 246 0.96

6 14 0.0054 1.3 11.2 1.1 3 23 257 277 256 277 0.98

7 14 0.00052 0.13 14.4 4.9 1 23 283 305 283 305 0.96

8 14 0.0013 0.32 13.2 0.2 2 23 325 346 324 346 0.97

9 14 0.25 62 6.0 1.1 1 11 381 391 381 403 0.81

10 14 0.00012 0.029 16.5 3.6 1 23 409 432 409 432 0.97

11 14 0.00016 0.039 16.0 2.2 1 23 444 467 444 467 0.94

12 14 0.0011 0.27 13.4 1.3 3 23 476 496 475 496 0.99

13 14 3.8e-06 0.00093 21.2 3.0 1 23 502 524 502 524 0.97

14 14 2.9e-06 0.00072 21.5 1.4 1 23 530 552 530 552 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.3	75	5.7	0.3	2	23	105	126	104	126	0.95
2	14	0.14	36	6.7	3.0	1	23	132	154	132	154	0.97
3	14	0.0017	0.42	12.8	1.9	1	23	160	182	160	182	0.91
4	14	9.7e-05	0.024	16.7	3.6	1	23	188	211	188	211	0.98
5	14	2.4e-05	0.0058	18.7	3.6	1	23	223	246	223	246	0.96
6	14	0.0054	1.3	11.2	1.1	3	23	257	277	256	277	0.98
7	14	0.00052	0.13	14.4	4.9	1	23	283	305	283	305	0.96
8	14	0.0013	0.32	13.2	0.2	2	23	325	346	324	346	0.97
9	14	0.25	62	6.0	1.1	1	11	381	391	381	403	0.81
10	14	0.00012	0.029	16.5	3.6	1	23	409	432	409	432	0.97
11	14	0.00016	0.039	16.0	2.2	1	23	444	467	444	467	0.94
12	14	0.0011	0.27	13.4	1.3	3	23	476	496	475	496	0.99
13	14	3.8e-06	0.00093	21.2	3.0	1	23	502	524	502	524	0.97
14	14	2.9e-06	0.00072	21.5	1.4	1	23	530	552	530	552	0.99

Sequence Information

Coding Sequence: ATGTGGTTGGCGTCGAGTATAAAACACGAATTACAAGACGTAGAAAGTCACGCACGAACGGAAAATGATAAAGATGCTATCAAATCGagaaaaataagcaaaaaaacaACGAAAAGGGAGTACAAGAAAAGGTcgcaaacaaaaaaaagcgAAGAAAACGAAGACGATGAGGAGTACGATGAGGAGGAGGTTGAGGAGGATAGCGACGAGAAGGAGAAAAAGGTAACGACGAAAAAGTTGAAACGGAACCATCGCCGTCGTAATAAGAAGGGCGTCGCACATCCACCACCCGTCGAATTGGACGAACCTATACAGTGCGATTTGTGTAACGACACTTACAAAAACAACGTGGCATTTTCGCTGCATTCGATACGACACAGCGACGATGAAAAGTACTCGTGTCACATATGCAATTACAGAAACGCCTCGAAATACCACATCGAGATGCACGTCAGGGCGCACGAGGGTACGACCAGCTACAAGTGCGAAATTTGCAATAAAGCCTTCACTGTCAGCACGCACGCCATAGAGCACAAGTACTTCCATTCCGGCGAGAAGCCCTTCCAATGTGAGATATGCGGCAAGCACTTCATGTTCTCCAGATTTTTGGCTTCGCATAGACGCACCCAACACTGGGAGATCATCACAGGCACCCCGTTGATCAAATACGATTGCACGATATGCAATAAACATTACACCTCTTCCAGCGGTCTTAAAAGACACAAACTTCGAAATCACAACTACGAAGGCATCGACACGTCCGTGTTGTGCGACATTTGCGGCAAGAAGATTTCCAGCAAGGAGAAACTTAAATTCCATCGTAGAGTCCACACCGGTTATCGACCTCACGCTTGCGAGGTGTGCTACAAATGTTTCTCGACCAAAGAACAGAAAAAGGAACACCTCAGGGtgcacaccggcgaaaaaccctttgtttACCACCCGCCCCCGTTGAGACTCGAACGTCCAATCAAATGCGACGAATGCGACAACGTATTTGAAAACAACGTCGACTTTGCGCTTCACTCGAAGACTCACGACAAAGACGGAAAATACACGTGCCATTTATGCATAAATTTTCGCAATGCTTCCAAATACCAAATTGAGATGCACGTAAGAGCCCACGAAGGTACCACCAAGTACAAATGCGAAATTTGCCATCAGGGCTTCACCATCAGTACTCGAGCCGCGGAACACAAGTACTTCCACACCGGCGAGAAGCCGTTTCAGTGCGAAATTTGCGGCAAACACTTCATGTACTCCTGGTTCTTATCGAGACACAGAAAATCCACCCATTACGAAATTCTCACCGGCAATCCTATGGTCAAGTACGATTGCTCCGTTTGTAACAAACATTATGCGACGGCATCCAGCCTGAGTCGCCACAAACTgaacaaacacaaaaaaatagaCGGCTCCGTGTTGTGTGATATTTGCGGCAAGAGACTGTCGAGCAGGGAAAAACTCAAATTCCACCTGCGAACCCACACGGGGTACAAACCTCATTCGTGTCACCTGTGTCCCAAGAGCTTCTCCAAAAAGGACCAGCTCGTAGAACACGTCAGGGTACATACGGGCGAGAAACCATACGTTTGTAAATATTGCGGCCGGGGATTCACTCAAAGAACGCCGTTGAAAACCCACGAAAAAACCCACAATCGCGATGAGCGTACTTCTTGTGTGATTTGCGGCGCTGCTGATGGGTGTGCGCACCTGCCAAAACATAGCATCACTCCGTGTCCTTCGTGCGGTGAGATAGGTCCTTGTCCTCATGGCATGTCCTGTCCTGTTTGCGGCTCCTACACGCTGTGTGAGCACATTTTGAAGATGAGCGTAATGACGCCGCATCGGGACGAAATGGCATGTCTCGTTTGTGGAGAGTTGGGATTTTGCCCACACATACCTCGAAGTCCCTTTAAATCGCCCAAAAAGGAAGAGGTAACGTGCAATGCTTGCGGTATATCAGGATCCTGCAAACATACGATTgccttttaa
Protein Sequence: MWLASSIKHELQDVESHARTENDKDAIKSRKISKKTTKREYKKRSQTKKSEENEDDEEYDEEEVEEDSDEKEKKVTTKKLKRNHRRRNKKGVAHPPPVELDEPIQCDLCNDTYKNNVAFSLHSIRHSDDEKYSCHICNYRNASKYHIEMHVRAHEGTTSYKCEICNKAFTVSTHAIEHKYFHSGEKPFQCEICGKHFMFSRFLASHRRTQHWEIITGTPLIKYDCTICNKHYTSSSGLKRHKLRNHNYEGIDTSVLCDICGKKISSKEKLKFHRRVHTGYRPHACEVCYKCFSTKEQKKEHLRVHTGEKPFVYHPPPLRLERPIKCDECDNVFENNVDFALHSKTHDKDGKYTCHLCINFRNASKYQIEMHVRAHEGTTKYKCEICHQGFTISTRAAEHKYFHTGEKPFQCEICGKHFMYSWFLSRHRKSTHYEILTGNPMVKYDCSVCNKHYATASSLSRHKLNKHKKIDGSVLCDICGKRLSSREKLKFHLRTHTGYKPHSCHLCPKSFSKKDQLVEHVRVHTGEKPYVCKYCGRGFTQRTPLKTHEKTHNRDERTSCVICGAADGCAHLPKHSITPCPSCGEIGPCPHGMSCPVCGSYTLCEHILKMSVMTPHRDEMACLVCGELGFCPHIPRSPFKSPKKEEVTCNACGISGSCKHTIAF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -