Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 8.1e-05 0.02 17.0 5.8 2 23 132 153 131 153 0.97

2 6 6.6e-06 0.0016 20.4 1.7 1 23 159 181 159 181 0.98

3 6 0.00015 0.036 16.2 2.9 1 23 187 209 187 209 0.95

4 6 6.3e-07 0.00016 23.6 2.9 1 23 215 237 215 237 0.98

5 6 5.8e-06 0.0014 20.6 4.5 1 23 243 265 243 265 0.98

6 6 1.9e-05 0.0046 19.0 2.7 1 21 271 291 271 292 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	8.1e-05	0.02	17.0	5.8	2	23	132	153	131	153	0.97
2	6	6.6e-06	0.0016	20.4	1.7	1	23	159	181	159	181	0.98
3	6	0.00015	0.036	16.2	2.9	1	23	187	209	187	209	0.95
4	6	6.3e-07	0.00016	23.6	2.9	1	23	215	237	215	237	0.98
5	6	5.8e-06	0.0014	20.6	4.5	1	23	243	265	243	265	0.98
6	6	1.9e-05	0.0046	19.0	2.7	1	21	271	291	271	292	0.95

Coding Sequence: ATGGCATTAAGACAATATCTATCAAGAAAACAACCACTTCAAATACCACTTGTTCCACAGCCAGAAAAACAAGTTAAATCTGTAATTGGAAATATGGGTAACTTTGTTCAACACAGATTACAGCAAAAGGATGAGCCCAGCAgttctaattttattaaagatgAAGTTATAGGTGAGGATTTGAACGTATATCTAGATGAAGAATCGAGTCCGCTTTCTGATGAAATGCGGGATCCATTTTTGCCAATAAAATCAGCTGAGTGTCGTGAAACAGGATGGAATCACTTATTAGCCGAATCCCGAAGTCAGTCttttgaagaagaagaaccccTTTTAGATTTGATGAAAATCGAAAAGGGCTCTCCAAAAAACAAGGAAGGTTCTAGGCCATGGCATTGTGAATATTGCGACAAGTCTTTTAACTTGAAACACCACCTAATAGGTCATTTAAAAACCCACTCAGGTGTGAAGCCTTATCACTGTGTGATATGCTCGAGACCCTTTGCAGATAGAAGCTCGATGAATAGACATCTGAAAACCCACACAGGGCTGAAACCGTTTTTATGTCGGATTTGCGGTCATTCTTTTGCAGAGAAATACTATTTAGCTATACATCATAGGAGTCACTCGGGAGAGAAACCTTACGCTTGTGAGATTTGTTCAAAGCATTTCTCCAGAAAAGACACTTTGAACATGCATTTGAAGACGCACACGGGGGAACGGCCCTATTCTTGCGAGATCTGCCAAAAGACGTTCTCTTTCAAGCATCATCTAATCATCCACGCTAGAAATCATAATGGAGAGAGGCCTTTTCATTGCGTCACTTGTTCTAAATCATTTACGGATCGTAGTTCATTCAATAGACATATCAAATCGTACTGTAGATTAAACTCTATCGTCCCTAGTGTTGATAAGCAGGAGTGTTTGGTAAAAGGAGAGCAAAATGAATACTCTCAAATCAAGAGCGGTTAG
Protein Sequence: MALRQYLSRKQPLQIPLVPQPEKQVKSVIGNMGNFVQHRLQQKDEPSSSNFIKDEVIGEDLNVYLDEESSPLSDEMRDPFLPIKSAECRETGWNHLLAESRSQSFEEEEPLLDLMKIEKGSPKNKEGSRPWHCEYCDKSFNLKHHLIGHLKTHSGVKPYHCVICSRPFADRSSMNRHLKTHTGLKPFLCRICGHSFAEKYYLAIHHRSHSGEKPYACEICSKHFSRKDTLNMHLKTHTGERPYSCEICQKTFSFKHHLIIHARNHNGERPFHCVTCSKSFTDRSSFNRHIKSYCRLNSIVPSVDKQECLVKGEQNEYSQIKSG

Sequence clustering based on sequence similarity using MMseqs2