Aaln016099.1
Basic Information
- Insect
- Agelastica alni
- Gene Symbol
- -
- Assembly
- GCA_950111635.2
- Location
- OX467710.1:20607125-20631067[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.6e-05 0.011 17.8 0.4 1 23 130 152 130 152 0.98 2 13 0.04 9.8 8.5 0.3 1 23 159 182 159 182 0.93 3 13 7.7e-07 0.00019 23.3 2.7 1 23 206 228 206 228 0.98 4 13 0.0088 2.2 10.6 0.0 1 23 241 263 241 263 0.94 5 13 0.15 37 6.7 0.0 1 23 269 292 269 292 0.93 6 13 0.0031 0.75 12.0 1.7 1 19 299 317 299 318 0.97 7 13 0.00019 0.046 15.8 5.5 1 23 327 349 327 349 0.97 8 13 0.0019 0.46 12.7 0.3 2 23 355 376 354 376 0.97 9 13 6.6e-06 0.0016 20.4 0.4 1 23 384 406 384 406 0.98 10 13 0.0029 0.7 12.1 0.2 3 23 414 434 412 434 0.97 11 13 9.1e-05 0.022 16.8 0.3 1 23 440 462 440 463 0.95 12 13 0.054 13 8.1 1.8 1 23 477 499 477 499 0.96 13 13 0.00046 0.11 14.6 0.1 1 20 856 875 856 878 0.93
Sequence Information
- Coding Sequence
- ATGTCATTGAACTTTTCGATTGAAGAATTAGCTATTATAGCTCTTCTTCTTGATGAAGAAGATAGTATCAagattcatGCTTTCATACCAGACGCGGAAGAGGAAGATAACTTGCATGGATTAGATGAGTTAGATGAAAAtggagaaaaaaataaaaaaaataaacagttgctaaagaagaaaaagaagaaaattaaagaaGAGTTTGAACATTTTGAAGAAGACCTTGgaGCTTCAAGTTCTCGTACATATAATTATGTAGATGAAGATGTAAAGCTTATGGAGCAAATGTCGAATAATGTAAAACACGATTACGATTACCTAGAACAAGATGAAGAACAACAATCTACGGAGTCGCGTTATCCCGTTATCGATCCCAAAAAACCGTTTGTATGTCAACACTGCGGAGTAGGATTTGCCAGGGAAAAAGCTATGATGTCACATATTAGAATGCATTCCGAAGGTGAAAGCCCTTTCGAATGTCAAAAATGTGGCGAGATGTTTTGGGATTTAATGCAAATGAAGGAGCATGTAAAAGAAAAACATGGCGAAGTAGATGATTACGAGGAtgacgatgatgatgattattCCGAAGAAGATACAAAGTATGGTACATATTACTGTGCTACTTGTGGATTATCATTTCACAGgcaAGACAATCTTCGAAGACATCAAAGAATTCACGTTAAAGAAGAGTTTGTTAACGAACATGAATTTGGGCATATTTGTAATGTATGTGGGGAATCGTTTCAAGAAGCTTTAGATTTACTAGCCCATGCAGAAATACACACGAGAAATATAGATTATAGGTGTATGATATGTGGAGAAAATGCAGAAGATGAAAATTTATTAGCGGTACATGTTCAAGCTAAACATGGAAAAAATCTTCCTCCATATACCTGTATGCTTTGCGGCCGTTCCTGTAAAGATCGACGTTCATTACTTAAACATTCTTGGGAACATTCTAAAGAAAAGGTCTTTGCTTGCAATAAATGCGACAAAACGTTCCACAACAAAACCCGTCTCAAACGGCACACACTATCTCACAGAAATAAAGTGGTAACTTGTGATGTTTGCGGTGAAGAATTCCCTGACGGCAGATCATTAATGAATCATAGACACAGTCATACCAGCGTGTCCGGTAGGCAGTTTCCCTGTAGAGAATGCGGAAAAACATTTGGTTCTAGGAGCTCGCAACAAATTCATATTAGAATTCATACAGgcGAAAGACCATATGGTTGCCGCTTCTGTTGGAAAGCTTTTGCAGATGGTGGTACTCTTCGAAAACACGAACGAATCCATACTGGAGAAAAGCCTTATGCATGCGCTGTTTGTCCACGAGCTTTTAATCAACGAGTAGTACTTCGTGAACATATAAGGTCGCATCATTCTGGACCTGATCCAAAATATTCTAATAGTATGACGCCTTATTGTTGTTCCGTATGTTCGGACATGTTCGCCACTTCTCAGGatcttattttacatttaattcaTCATTGCGACATGAACACTGCGATGAAGCGGCAGCCTCAAATAGGTCCTAGAAAATATAAACGGAGAAGGAAACTCAAACCCCATGAGTTGGAGTTAATTTCAAGTAGAATAGAAGATGGGGAAAATGAGCAATCAGAGGATTTGGGAGACCATTATACAGACTCGGAGGAAGAGAAAGAAAGGAAAAGAAGATACACTCGAAGACAGCAAGTCAAAAAATCTCAATCTCCGGAGTCACCAAAGGAAGCTGCTTCTGAAACATTTGCAGACATTTATAACAGCGTATCATCAACGATAGaaaatatcaaCTCTTTAGTAAATTCAAAGTCAACACCAAAGGCCAAACCACAGTTTAAGAAGTTAAAATCTGACCAATCAATCCCAAGTCGACCAAAAATGATTCACACCCAAAAAACGCGGGTGCCAGTCGAAACGGGCGAAGATGGACGAATTAGGCACAAGACAAAGACTTTGATTACTCGAACTCAACCTGCCGAGATAAAATCAGCAACTGGTGAAAGAATCCGACCAAGAACTAAGAATGTTAATTACCACATCCTTCAAGAAAAACTCCCTCTGGCAACGTTTGGTGATGTTACCATAAAAGATCCCACACAAGAAGCTGTCGACAATcttttaaaacaagaaaacgTCATCGTGGAGAATGAACATGTTTTGTTAGAACCAGAACCGCAACAAAATAACGGTGTCATTTACATGGATCAATTTGAACAACCGCCAGAGGTAGCTTCAGAGCAGATTGTAGAGAGTGAAATGCCAGTGCCTGTGTCCTTGGTACAAGTTCGGAGGGTGACGAGATCAAAAAGCAGTAGTAACAACATTAACTTAAAGCCGggaagacatattattggaccgGGTAGTAAAgtaCGATTAGTAAAAGAAGGCATGATAGTTTCGAAAGCTCGCAACAAGAAATCTGAATCGGAAAGCGAGATTCTTCCCGACATAATACATCACCAACAAATTAAGCAAGAATTTATCGATCCGAGTCCTCTGCACGAATTAGCAGAGATATCTATGCAGCATGCAAATGCCAACTCACATAGTTTTTTTAGATGCGAGATGTGCAGTGAAGTGTTCACGGACAGAGCGCAACTTCTCGTTCACGTGCCCATACACATTTGA
- Protein Sequence
- MSLNFSIEELAIIALLLDEEDSIKIHAFIPDAEEEDNLHGLDELDENGEKNKKNKQLLKKKKKKIKEEFEHFEEDLGASSSRTYNYVDEDVKLMEQMSNNVKHDYDYLEQDEEQQSTESRYPVIDPKKPFVCQHCGVGFAREKAMMSHIRMHSEGESPFECQKCGEMFWDLMQMKEHVKEKHGEVDDYEDDDDDDYSEEDTKYGTYYCATCGLSFHRQDNLRRHQRIHVKEEFVNEHEFGHICNVCGESFQEALDLLAHAEIHTRNIDYRCMICGENAEDENLLAVHVQAKHGKNLPPYTCMLCGRSCKDRRSLLKHSWEHSKEKVFACNKCDKTFHNKTRLKRHTLSHRNKVVTCDVCGEEFPDGRSLMNHRHSHTSVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYSNSMTPYCCSVCSDMFATSQDLILHLIHHCDMNTAMKRQPQIGPRKYKRRRKLKPHELELISSRIEDGENEQSEDLGDHYTDSEEEKERKRRYTRRQQVKKSQSPESPKEAASETFADIYNSVSSTIENINSLVNSKSTPKAKPQFKKLKSDQSIPSRPKMIHTQKTRVPVETGEDGRIRHKTKTLITRTQPAEIKSATGERIRPRTKNVNYHILQEKLPLATFGDVTIKDPTQEAVDNLLKQENVIVENEHVLLEPEPQQNNGVIYMDQFEQPPEVASEQIVESEMPVPVSLVQVRRVTRSKSSSNNINLKPGRHIIGPGSKVRLVKEGMIVSKARNKKSESESEILPDIIHHQQIKQEFIDPSPLHELAEISMQHANANSHSFFRCEMCSEVFTDRAQLLVHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00792404;
- 90% Identity
- -
- 80% Identity
- -