Basic Information

Insect: Agelastica alni
Gene Symbol: -
Assembly: GCA_950111635.2
Location: OX467713.1:4729964-4733283[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00023 0.057 15.5 5.3 1 23 112 134 112 134 0.98

2 11 1.1e-06 0.00026 22.9 1.3 1 23 139 161 139 161 0.99

3 11 0.0011 0.26 13.4 1.9 1 23 169 191 169 191 0.93

4 11 7e-07 0.00017 23.5 1.1 1 23 197 219 197 219 0.98

5 11 1.9e-05 0.0048 18.9 3.0 1 23 228 250 228 250 0.96

6 11 0.00014 0.034 16.2 2.1 1 23 256 278 256 278 0.96

7 11 0.0002 0.049 15.7 2.3 1 23 284 306 284 306 0.98

8 11 1.5e-08 3.6e-06 28.7 0.4 1 23 312 334 312 334 0.98

9 11 3.7e-05 0.009 18.1 0.5 3 23 342 362 341 362 0.99

10 11 0.00014 0.033 16.3 2.1 1 23 368 390 368 390 0.98

11 11 0.00019 0.046 15.8 3.4 1 23 396 418 396 418 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00023	0.057	15.5	5.3	1	23	112	134	112	134	0.98
2	11	1.1e-06	0.00026	22.9	1.3	1	23	139	161	139	161	0.99
3	11	0.0011	0.26	13.4	1.9	1	23	169	191	169	191	0.93
4	11	7e-07	0.00017	23.5	1.1	1	23	197	219	197	219	0.98
5	11	1.9e-05	0.0048	18.9	3.0	1	23	228	250	228	250	0.96
6	11	0.00014	0.034	16.2	2.1	1	23	256	278	256	278	0.96
7	11	0.0002	0.049	15.7	2.3	1	23	284	306	284	306	0.98
8	11	1.5e-08	3.6e-06	28.7	0.4	1	23	312	334	312	334	0.98
9	11	3.7e-05	0.009	18.1	0.5	3	23	342	362	341	362	0.99
10	11	0.00014	0.033	16.3	2.1	1	23	368	390	368	390	0.98
11	11	0.00019	0.046	15.8	3.4	1	23	396	418	396	418	0.95

Sequence Information

Coding Sequence: atgaCCGATTTAAAATTGCTGTATTCGGACACCTTGCCATCGAATATCTGCAACGAATGTGCACAAGGTGTTTTCACAGCTTTTGATTTTGTAGAAATATGTATAGCTTCTGATGCAAGATTAAGAACCCAAGAAACTAGGCGAATGTTAAGAAAAATTGAAGCAGAAGCACTTGAACAAGAAATCGAAGATGAAATTACTGTCAAATGTGAAACACCATCAGAGCAAAATGAAGCAGTGGAACtaacatcaaataaaaatgaagttgtagaagaaaaagaaaacccTTTACCAAAAGAATTGCAGTTTACTATAGCTCGCACTAAAAACAAATACATATGTGAAGTCTGTAATTGTAGGTttaacaataaaaccaaattcgTGAAACATCAAAAAACCCATGAAGAAAATGCTTTCAAATGTACTGAATGCTCACTGAGTTTCTCAAAAAAACCTAACCTTAACATTCATTTAAGATCACACATCCAAAAtaaggacaaaaaatttagttGTATTGAATGTGGAAAACAATTCACGTTTCAGTATTTGCTAAAACAGCACGAGTATAAACATAAGGATATCAAACCTTTTCCTTGTGCAAAATGTGATAAAGgGTGTATAACTGCTGAGAGTCTTCGTAGACACATGCGCACCCATGatgaaaattattcaaaaaagatCCACATTTGCCACTTGTGCAATAAATCTTTTGCTTATCCTAGTTTTTTAGTAGAGCACATGAAAAATCACACTGGAGAAAAACCCCATATTTGCAATGTGTGTGGTAAAGGCTTTAGGCAAAGTGGAGCTTTACATTTTCACCAGAGAATTCATACAGGATATAAACCATTTCCTTGTCATGTGTGCAAGGAAAATTTCATGTCCAGAAgtattttaaaagtCCACATGAGGAAACACACAAATGAACGGCCCTACGTTTGTGACATCTGTGGAATCTCTTTTAGACAATCTTCCGACCTTAAAAATCACAGAAGGATACACACAGGAGAAAAATTAGTCTTATGTACTGTTTGTGGAAAAAAACTCTCTACCACAGGTCAACTGACAATTCACTTGCGAAGCCATACTGGCGAGAAACCATACTCCTGTTCCACTTGCAACAAATGCTTTGCTGCAAAAACGATGCTAGTCACTCACGAAAGAGTTCACACTGGCGAACGGCCCTATTTATGCACCGtttgcaataaaagtttttCCCAAAATTGTACCCTACTCTCGCACTCGAAAATCCATAACAAATCGTACTCCAAAGAAAAAATCGatagtaaaaaaaagttgaataaaAGTAACAACACCAGCGGAGGAGGAGGAGGTAGGGGAAGtttgatgaaaaaaatagccgatttacacaaaaaaggtcTACTTTTGGTACAAGCGCAAAACGAAGAGTTCGTGGTAGAAGATATTGTGGAAATACATAGTGAAGAAGCAAGTAATGGCGAAGAAGAAACTCAGTTTACAGTTATTCTTCCTGCTAGGCAGCTCGATGATTCAAAATAA
Protein Sequence: MTDLKLLYSDTLPSNICNECAQGVFTAFDFVEICIASDARLRTQETRRMLRKIEAEALEQEIEDEITVKCETPSEQNEAVELTSNKNEVVEEKENPLPKELQFTIARTKNKYICEVCNCRFNNKTKFVKHQKTHEENAFKCTECSLSFSKKPNLNIHLRSHIQNKDKKFSCIECGKQFTFQYLLKQHEYKHKDIKPFPCAKCDKGCITAESLRRHMRTHDENYSKKIHICHLCNKSFAYPSFLVEHMKNHTGEKPHICNVCGKGFRQSGALHFHQRIHTGYKPFPCHVCKENFMSRSILKVHMRKHTNERPYVCDICGISFRQSSDLKNHRRIHTGEKLVLCTVCGKKLSTTGQLTIHLRSHTGEKPYSCSTCNKCFAAKTMLVTHERVHTGERPYLCTVCNKSFSQNCTLLSHSKIHNKSYSKEKIDSKKKLNKSNNTSGGGGGRGSLMKKIADLHKKGLLLVQAQNEEFVVEDIVEIHSEEASNGEEETQFTVILPARQLDDSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -