Basic Information

Insect: Agelastica alni
Gene Symbol: -
Assembly: GCA_950111635.2
Location: OX467709.1:44218944-44220601[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00039 0.096 14.8 0.8 1 22 147 168 147 168 0.96

2 11 1.1e-05 0.0028 19.7 3.0 1 22 177 198 177 198 0.96

3 11 0.00041 0.1 14.8 0.0 1 23 224 247 224 247 0.93

4 11 0.0029 0.71 12.1 2.4 1 23 257 279 257 279 0.98

5 11 5.6e-06 0.0014 20.6 0.2 2 23 286 307 286 307 0.96

6 11 4.7e-08 1.1e-05 27.2 0.8 1 23 313 336 313 336 0.97

7 11 6.7e-06 0.0016 20.4 0.5 1 23 344 366 344 366 0.98

8 11 5.2e-08 1.3e-05 27.0 1.5 1 23 372 394 372 394 0.98

9 11 0.00039 0.095 14.8 2.7 1 23 400 423 400 423 0.97

10 11 0.033 8.1 8.8 4.8 1 20 436 455 436 458 0.95

11 11 5.8e-07 0.00014 23.7 3.9 1 23 464 487 464 487 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00039	0.096	14.8	0.8	1	22	147	168	147	168	0.96
2	11	1.1e-05	0.0028	19.7	3.0	1	22	177	198	177	198	0.96
3	11	0.00041	0.1	14.8	0.0	1	23	224	247	224	247	0.93
4	11	0.0029	0.71	12.1	2.4	1	23	257	279	257	279	0.98
5	11	5.6e-06	0.0014	20.6	0.2	2	23	286	307	286	307	0.96
6	11	4.7e-08	1.1e-05	27.2	0.8	1	23	313	336	313	336	0.97
7	11	6.7e-06	0.0016	20.4	0.5	1	23	344	366	344	366	0.98
8	11	5.2e-08	1.3e-05	27.0	1.5	1	23	372	394	372	394	0.98
9	11	0.00039	0.095	14.8	2.7	1	23	400	423	400	423	0.97
10	11	0.033	8.1	8.8	4.8	1	20	436	455	436	458	0.95
11	11	5.8e-07	0.00014	23.7	3.9	1	23	464	487	464	487	0.97

Sequence Information

Coding Sequence: ATGAACGTAAGTTATTGTAGTATTTGCCTGGAGGCAGTATCACATGCAACTCGCTTTAAAGATTTAGATGAAAATAATGTTAACTGGCTAACAAAGTTAAAATCCATTGTATCAGAGTTGcAAGATTCATCAGGAGAGAATTTAATATGTAATCCATGTACAAAAAAATTGGatgattttttaatgtttagaaaAAGGTTAGAAGACTTAGTGGAAAGATTAAAGTGTATCAATAAAGAAGAAAGTCCACATGATTTTCTGGAGGAAAATGATGCTAcatttaatgataattatagtGATGACTCCAAAAATTTTGATGATGAAGTACTAAGTTCCAGAATGGAAAAACTTGGCTCTTACATTATACCATTGGAGCAATTAGCAGCAATAAAATATGAAGACCCAGAAAATGTGAATATTTTGCAGTTAAGAGACTCATATACTTGTTTGGTATGTGatgatgaatttaaaaataaaagtgatctGAAGACTcacaaaaaaacatgtaaaagaaGCCCAAAAGGAGTTTATACTTGCTACACATGCAATAAAACCTATACTACTAAAACCAACCTCAAAATTCAtcaaaaaaaatgtggaaaGGAAAATCCTGAAAATGAAAGTGttgataaaaagttaaaaaaaagaggtaGAAAGTCTTCAAGAAGTTATACATGTGAAATTTGTGATGAAGTATTTAGCTTAGTAAAAGATTTAATAGCTCATTCTAAAGGAATTCATGCCATTGAAGAAAAGTTGGTGAAACCATATTCTTGTAATCAATGTACTCAAAGATTTAGAACATACGCTGGTTATGATCAACACTTGAAATATCATAGCAGAAATAGAGACAATGTATGTAGTTTATGTGGTAAAAGATTTATAACAAAAAGTGAACTAATAGTACATGAATATACTCACTTTAATAGAAGAAATTATAAATGTACAACCTGCGGAAAAGCTTTTAACACtaataagaatttaaaaacgCATATTTTGGTTGTACATACAGATAGAGCAGCTTGGAAGTATGCTTGTGCAATTTGTGAAAAAAGATTTCCACAAAAAGGAAATTATGATCAGCATATGAAGCGGCATGCTGGTGATAAACAATATATCTGCCACATATGTCAAAAACCATTCATAACAAGCAGTGAATTGAAGAGACATATGAACTTACATTCAAATGTAAAAGCTTTTACTTGTGAATTTTGTCAGAAAGAATACAAAACTTTAAGAACTTTAAACACACATCTAAGCAGGTCTCATTCTGTAGGTGATAAACTacctgaaaaagaaaaaagatatgTTTGTCACATATGTCCAAGTCAATTTTATGATAAGCAAAAATTATCTAGACATCTGTATTGTCACTCTGGAATTAAACCGTTTTCATGTAGTAGTTGTGATAAAAAATTCACAGATAAGTCTTATTTAAAGCATCATATGAAAGTGGCACACAATATTATGGAAGTACCAAATGAAGTTAAATACCAGACAcaagatgaaatgaaatatgaAGTTCCCAATCAGCTTAAGTTCCAATATGATGTTAAATAG
Protein Sequence: MNVSYCSICLEAVSHATRFKDLDENNVNWLTKLKSIVSELQDSSGENLICNPCTKKLDDFLMFRKRLEDLVERLKCINKEESPHDFLEENDATFNDNYSDDSKNFDDEVLSSRMEKLGSYIIPLEQLAAIKYEDPENVNILQLRDSYTCLVCDDEFKNKSDLKTHKKTCKRSPKGVYTCYTCNKTYTTKTNLKIHQKKCGKENPENESVDKKLKKRGRKSSRSYTCEICDEVFSLVKDLIAHSKGIHAIEEKLVKPYSCNQCTQRFRTYAGYDQHLKYHSRNRDNVCSLCGKRFITKSELIVHEYTHFNRRNYKCTTCGKAFNTNKNLKTHILVVHTDRAAWKYACAICEKRFPQKGNYDQHMKRHAGDKQYICHICQKPFITSSELKRHMNLHSNVKAFTCEFCQKEYKTLRTLNTHLSRSHSVGDKLPEKEKRYVCHICPSQFYDKQKLSRHLYCHSGIKPFSCSSCDKKFTDKSYLKHHMKVAHNIMEVPNEVKYQTQDEMKYEVPNQLKFQYDVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -